Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2237 ATGGCTGAAAATGACATAGATCGCTCCTCTGATAATGTTTCTCCTGATTCTACAGAGAAATCCTGCCAAACTTCAAATGTTGAATTTTCTGAAGCAGAGGAAATCCTTATTGCCATGGTGTATAATCTGGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGTAGAACTGCGgaagaaatagagaaatattGGACGTCAAGATGCTCGACTAGCCAATGA 228 0.3947 MAENDIDRSSDNVSPDSTEKSCQTSNVEFSEAEEILIAMVYNLVGERWSLIAGRIPGRTAEEIEKYWTSRCSTSQ 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2237 75 CDD SANT 28 67 IPR001005 -
Ssu3g2237 75 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 12 74 - -
Ssu3g2237 75 Pfam Myb-like DNA-binding domain 28 68 IPR001005 -
Ssu3g2237 75 MobiDBLite consensus disorder prediction 1 25 - -
Ssu3g2237 75 SMART sant 25 73 IPR001005 -
Ssu3g2237 75 SUPERFAMILY Homeodomain-like 28 70 IPR009057 -
Ssu3g2237 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 74 - -
Ssu3g2237 75 Gene3D - 28 71 - -
Ssu3g2237 75 ProSiteProfiles Myb-like domain profile. 29 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2237 Ssu-Chr3 72166378 72167416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2237 29 72 MYB Transcription Factor Family AT5G14750 50.000 1.80e-12 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu3g2237 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2237 - - gmx:100500494 128.257