Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2236 ATGTCTGAATTCGACACACACATCCCAACTACTTTTGATCCCTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGAACTAAAGAGTATGTTCATGTTCGTGTACAACAGCGTAACGGAAGGAAAAGCCTAACAACTGTTCAAGGATTAAAGAAAGAGTACAGCTATAGCAAGATACTCAAGGACCTGAAGAAAGAATTCTGCTGTAATGGTACTGTTGTCCAAGACCCTGAGTTGGGCCAGGTCATACAACTTCAGGGAGATCAAAGAAAGAATGTTTCTACTTTCCTTGTGCAGGCTGGCATAGTAAAGAAGGAACATATCAAGCTTCATGGTTTCTAA 342 0.4211 MSEFDTHIPTTFDPFAEANAEDSGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKLHGF 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2236 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Ssu3g2236 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Ssu3g2236 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Ssu3g2236 113 SUPERFAMILY eIF1-like 5 113 IPR036877 GO:0003743|GO:0006413
Ssu3g2236 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Ssu3g2236 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 6 113 IPR005874 GO:0003743
Ssu3g2236 113 MobiDBLite consensus disorder prediction 1 23 - -
Ssu3g2236 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Ssu3g2236 113 Gene3D - 2 113 - -
Ssu3g2236 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2236 Ssu-Chr3 72153932 72154732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2236 1 113 Eukaryotic Initiation Factors Gene Family AT4G27130 88.496 4.61e-75 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2236 K03113 - gmx:100784390 226.483