Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2234 atgGACAGCTCAAGTGTGCCACAGAATAACGCATTTAGGCTCATATATAGAGCAGTCTCAGCAGCCAACTACGTGGAAATGGGAAGCCAGAATTACTTCAAGGTTTTGATTATTTGTCTTATAGCATTAATTGGATCAACTCAAGCTCAATTGCAGCTTGGTTTCTATTCCAAAAGCTGCCCAAAGGCTGAGCAAATCGTTTCGAAGTATGTCGTTGAGCATATCCACAATGCTCCATCACTAGCTGCTGCCCTCATAAGGATGCACTTCCATGATTGTTTTGTCAGGGGTTGTGATGGATCAGTGCTTCTGAACTCAACAAAAGACAATCAAGCTGAAAAGGACTCTATCCCAAATCTTACACTCAGAGGCTTTGGCTTCATTGACAAAATAAAGAGCCTTGTTGAAGCTGAGTGCCCTGGGGTAGTCTCTTGTGCCGATGTCTTGGCTTTGACCGCCAGAGACTCTGTTCATGCCATTGGGGGACCCTATTGGAATGTCCCAACAGGTCGAAGGGATGGGTTAATCTCCAAAGCAGCAGATCCGCTCCTCAACCTTCCTGCTCCATTTCACAACCTCACCACCATCCTAACACTCTTTGGCAATGCTGGACTTGACATAAACGACCTTGTCTTGCTTTCTGGTGCTCACACGATTGGTGTTGCCCATTGCTCAACAATTGCAACCCGACTATATAATTTTACTGGCAAGGGTGACACAGACCCAACTCTAGACAGTGAATATGCAACAAATCTCAAGACCCGTAAGTGCAAGAATATCAATGACAACACCACACTTATTGAGATGGACCCCGGAAGTCACAACACATTTGATCTTGGCTATTATAATCAAGTGGTTAAGAGAAGGGGTTTGTTCCAATCAGATGCTGCATTGCTCACTAGCTCTACCACAAGGTCTATTATCGCCAAACAGCTTCAGTCAACTCAAGGATTCTTTGTGGAATTCGCCAAGTCCATGGAGAAAATGGGCAGAATTAATGTCAAGACTGGAACAGAAGGAGAGATAAGGAAACATTGTGCAGTAGTAAATAGCTAA 1056 0.4413 MDSSSVPQNNAFRLIYRAVSAANYVEMGSQNYFKVLIICLIALIGSTQAQLQLGFYSKSCPKAEQIVSKYVVEHIHNAPSLAAALIRMHFHDCFVRGCDGSVLLNSTKDNQAEKDSIPNLTLRGFGFIDKIKSLVEAECPGVVSCADVLALTARDSVHAIGGPYWNVPTGRRDGLISKAADPLLNLPAPFHNLTTILTLFGNAGLDINDLVLLSGAHTIGVAHCSTIATRLYNFTGKGDTDPTLDSEYATNLKTRKCKNINDNTTLIEMDPGSHNTFDLGYYNQVVKRRGLFQSDAALLTSSTTRSIIAKQLQSTQGFFVEFAKSMEKMGRINVKTGTEGEIRKHCAVVNS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2234 351 ProSitePatterns Peroxidases active site signature. 82 93 IPR019794 GO:0004601
Ssu3g2234 351 Gene3D Peroxidase, domain 2 187 329 - -
Ssu3g2234 351 ProSiteProfiles Plant heme peroxidase family profile. 50 350 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PANTHER PEROXIDASE 25-RELATED 30 350 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Haem peroxidase superfamily signature 270 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Haem peroxidase superfamily signature 82 96 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Haem peroxidase superfamily signature 209 224 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Haem peroxidase superfamily signature 143 160 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Haem peroxidase superfamily signature 161 173 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PANTHER PEROXIDASE 30 350 - -
Ssu3g2234 351 CDD secretory_peroxidase 50 349 IPR033905 GO:0004601|GO:0042744
Ssu3g2234 351 SUPERFAMILY Heme-dependent peroxidases 50 350 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 Pfam Peroxidase 71 313 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 ProSitePatterns Peroxidases proximal heme-ligand signature. 209 219 IPR019793 -
Ssu3g2234 351 Gene3D - 54 350 - -
Ssu3g2234 351 PRINTS Plant peroxidase signature 60 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Plant peroxidase signature 161 176 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Plant peroxidase signature 123 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Plant peroxidase signature 208 220 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Plant peroxidase signature 284 301 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Plant peroxidase signature 324 337 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Plant peroxidase signature 142 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Plant peroxidase signature 84 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g2234 351 PRINTS Plant peroxidase signature 268 283 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2234 Ssu-Chr3 72102687 72106536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2234 40 351 Peroxidase AT1G05260 66.454 1.97e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2234 K00430 - gmx:100785662 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2234 3 72102687 72106536 Ssu3g2234 3 72102687 72106536 ECH
Ssu8g0799 8 13200020 13201437 Ssu3g2234 3 72102687 72106536 PCT