Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2230 ATGGCATGCATGATTGCAAAAGGACAAATGGGGAGCTTCCCACCTGAAGAGATTGCTTCCTTTGCTCCAACAAGAGGTTCAGCATCTTGTGAGCTGTGCGGGTTGCAGGCTTCATTGTATTGCCAAGCGGATAATGCGTATTTGTGTAGAAAATGTGACATATGGGTTCACCAAGCCAATTTTTTGGCCCTTAGACACTTGGCCACAATTGATCATTATATGGATATCGGAGGTTTGAGAAGAATCCAAGCAGCAGCAGCACCTTCGAGGCCTGATCTGTCGCCGGCTGTAGCTCCGCGTAGAGCTTCTTTGCGTCCATCGTCCTGTGGTGGAAATAGAGATAAAGGTAGGGGAGTGGGTACTGCTGTGAGGTCAAATGGAGGAAATGTTGCAGTGTTGTTGGGTGAAGATTCAGATAGGATGAGGTATTTGGGCGAAGGGGTTGGAGAATGGATGTTGGCTAGTATATATTGTAGGGGGAAAGGTAGAGGCTGGGGAGGAGGACGACCAGGCTGGTGGAATGCAGTGTCAGGAATGGAAATGGGAGCCAGTGTAGGGGAGACGCTAACCGTTTGGAATTTGAAGCTAGAATGA 594 0.4865 MACMIAKGQMGSFPPEEIASFAPTRGSASCELCGLQASLYCQADNAYLCRKCDIWVHQANFLALRHLATIDHYMDIGGLRRIQAAAAPSRPDLSPAVAPRRASLRPSSCGGNRDKGRGVGTAVRSNGGNVAVLLGEDSDRMRYLGEGVGEWMLASIYCRGKGRGWGGGRPGWWNAVSGMEMGASVGETLTVWNLKLE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2230 197 MobiDBLite consensus disorder prediction 90 120 - -
Ssu3g2230 197 CDD Bbox1_BBX-like 30 66 - -
Ssu3g2230 197 Pfam B-box zinc finger 29 58 IPR000315 GO:0008270
Ssu3g2230 197 PANTHER B-BOX DOMAIN PROTEIN 30-RELATED 29 79 - -
Ssu3g2230 197 SMART bboxneu5 25 70 IPR000315 GO:0008270
Ssu3g2230 197 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 29 79 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2230 30 70 C2C2-CO-like Transcription Factor Family AT3G21890 63.415 4.65e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu3g2230 zf-B_box 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2230 - - cpap:110821678 81.6481