Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2220 ATGGGCGATGGAGGCGTGGCGTGTATGCCTttgcagcagcagcagcagcatgTTATGGAGAGGTTGCCGAATGCGACGGAGAAGGCGCTCTGCGGAGGCAAGAGTGGGAACGGGTTCAGTTCTGGGTTGGTCAAGGTTGCTGgcaagaggaagaagaaaaaggtgaaGGTGAAGAGGAAAGTGGCGCCTGCGGCGAAGAAGGTGGTGAAGGGTGAATTGGCGTTGGACACAGTGAGCAGTGGGGGCGGGAATGATGTTGAGAGTGGGGAAGTGTGCGGGGAGATGGATGAAGTGGAAGAGGGTGAACTGGGGACCTTGAAGTGGCCTGGTTGCGAGCTGGAGAATAGAGAGTTTGTGGTGGAGAAGCCGGTGCCGCCTATGCGGAGAAGTGAAATTGAGAATGGGGAGATTGTCAGTGAGAGATGGAAGAAAGGGGAGGTGGAGAGGGGGGAGTTTGTTTCTGGAAAATGGAGAAAGGAGGATGTGGGGAAAGGGGAGATAGTTGTTGAGAAGGGTAGGAAAGGAGAAACTGAGAAAGGAGAGTATGGGTCGTGGAGAGGTGGAATTAATGATGATATTGAAAAAGGAGAATTCATTCCAGATAGGTGGCATAGGGGAGACATGGGGAAGGATGATTATGGTTACGCCAGAATTCACAGGTACCAGTCAGGTAGGGATAAAGGGTGGAAAAGTGAACGGGAGCGTACGCCACCTTCCGGGAGGTACTCAGGTGATGAGTATTTCAGGAAGAAGGAATTGAATAAAAGTGGAAGTCAGCATGCTAAAAGTGCTCCCAGGTGGGAGAGTGGACAAGAAAGAAATACAAGGATCAGTTCAAAGATTGTGGACGAGGAGAAGAATGAACACAGTAATAGTAGGACCCATACACGGGATTACTCATCTGGAAGTCGGTTGAAGAGGCATGGTAATGAATTAGAAAACTGTGAGCGGAACTATGGAGATTATGCCAGTTTAAAATGTCGAAGGCTTACTAATGATAGCTCACGTCATGCTTATTCAGAGCACTATTCTCGTCTCTCCATGGAAAGATCTTGTAGAAATAGTTCTTCAAAATCATCAGCAGATAAGTATTCTTCTAGACATCATGAGTCTTCTTTGCCTACAAAATCAGTTTATGACAAGCATGGGCGCAGCCCTGGTCATTCTGAGCGATCCCCACGTGATCGAGCCAGGTATTATGATCATAAAGATCGCACTCCAGTGCGTCGTTCACCCTACGGCCGTGACAGATCTCCATATAACCGTGAGAAATCCCCGCATGGTCGGGAGAGATCCCCATATAATAGGAATTGGGATAGAAGTCGTCACCATGATCATAAAATGAGAAGTCCTACTCGTTCTGAGCGGTCCCCGCAAGATCGAGGTCGACATCATGATCGGAGGGACCATACTCCAAATTTAATAGAGCAATCCCCACGTGATCGAACTAGGCCAAACATTCATCGAGAAATAAGGAGTAAAACCTTATCAAGTGAAAAACATAAGTCACAACATAGTTGTAAGGATCATGAAGACAAGCACATCCAAAAGGAGTCAAATCTTTCTGATATAGAATCTCAAGGTGAAAGAAATGTGCATAATGCCAGTAAGTCTATTGAGAAAGATGTCTGCAGTGAACCTGAAAAGGAACAACAGTCCTCTAGTCCGACTGTAAGCTGCAAAGACTCTCCTTGCTTGGAGCCACCACCTGAGGAGTTACCTTCTATGGAAGAAGATATGGACATATGTGATACTCCTCCACATGTCCCTGTGGTGATGGATTCATCATCAGGGAAATGGTTTTACCTTGATTATGACGGTGTAGAACATGGACCTTCTAAGTTATCTGACATCAAGGTCCTTGTTGACGATGGTGTACTAATGTCAGATCACTTTATTAAGCACATAGATAGTGACAGGTGGCTAACTGTTGAAAATGCAGTATCACCATTGGCAGCTCAGAGTTTTCCATCAGTTGTGTCAGACTCCATAACCCAGTTGGTAAACCCTCCAGAAGCTCCTGGTAATCTTTTGGCTGATAGTGGAGATATTCTTCAATCTGGTCCTGAGAATTATCAGGGAATCCCGGCCCCTTTTCTGCAGCCAATGTTATGCTCTGAAGACAGTGGGATTGTATCTGAATTGTTGGAGGACCTCCACATTGATGAAAGGGTTGGAGTTCTGTTAGAGGGTTATGATGTCATTCCAGGAAGGGAGTTTGAAGCAATAAAAGAAGCTTTGCAAATGAATTTTGAATATGCAAAATGGGAGGGATTGGGAGAGTTTGAAGGTTTTCCTTGGCATGATACTTGCCTGAGGATGGAACATGATTCAAGAATTGAttcatcaaaagaatatgagTCCCAGGGTAGTATACCCTCTGACAAGGATAATGGATTTACTCTTGGTGTTCTTGGTGACTGGTTTTCTGCTCGATGGTCATGCAAAGGTGGTGACTGGAAGAGGAATGATGATACCCAAGATAGATATTGTAACAAAAAACTTGTCCTTAATGATGGGTTTTCATTGTGTCAAATGCCTAAGTCTGGATGTGAAGATCCCCGTTGGACTCGAAAAGATGACTTGTATTATCCTTCTCACAGCAGGAGGCTTGATCTTCCTCTTTGGGCTTTTTGTACTGATGAAAGGGTTGATTGCAGTGCTGTGACTCTGAGCAAACCAGTTCAAACAAAGCTTGCTTCTGTTAGAGGAGTGAAAGGAAATATTCTTTCAGTGGTAAGGATAAATGCATGTGTAGTCAAGGACCAGGGATCATTGGTCTCTGAGTCATGCCACAAGACCCGAGGCAAGGATAGATATCACTCAAGGTCAACTCGGTCTTTCTCTTCAACCAGTGATAGCAAGAGATCATCAACTGAAGAAGATTCTCAGTCAAAAGCGTTTAATGATCAAGGTTCTCGAGGCTCTTGCAGGAGCATGGAATTCATTAATATTCCTAAAGACCATCTTTGTGCTGTCCATGATTTACAATTACATTTGGGTGACTGGTATTATCTTGATGGTTCTGGGCGTGAAAGAGGGCCTTCATCATTTTCAGAGCTACAGCATTTAGTAGACCAAGGAATTGTAAAAAAGTATAGCAGTGTGTTTAGGAAATATGATAAACTCTGGGTTCCTGTTACCTCTTCTGCTGAAACTTATGATGTCAGTCTAAGAAGGCATCAAGAAAGTAGTACAGTGTCTAGTGAATGTTCTGGACGTCCATCAAAGCCAATTCATGGTGCTTCATTTAGTGAACCtgaccaaaaatcaattttgtttaacaGCTTACACCCTCAGTTTGTTGGTTATACTCGTGGGAAGCTACATGAATTAGTAATGAGATCATATAAGAGCCGGGAATTTGCTGCTGTTATAAATGAGGTTTTAGATCCCTGGATCAATGCAAGACAGCCaaagaaagaaattgagaaACAAATATATTGGAAATCtgGTGATGGACATGCTTCCAAACGAGCTTGGATGCTGGTTGATGATAGTGAACAAGATAGTGATTTTGAAGATGGCAGCCTGACAATTGGAGAAGATGAATCTACTTTTGAGGCTCTATGTGGTGATGCTACTTTCGCCGGGGAAGGAAGTAACATTACTGATTCCAAGGCTGGAAGCTGGGGTTTATTGGATGGTCAAATGTTGGCACGTGTCTTCCACTGTTTGAGGTCTGATTTGAAGTCACTTGTCTTTGCATCAATGACTTGCAAGCATTGGAGAGCTACTGTAAGGTCTTACAAAGAGGTCTCAAGGCATGTTAATTTGTCATCCTTGGGTCATACTTGTACTGATTCCATAATGTGGAGCATTTTGAATGCTTATGAAAAAGACAAGATTGGATCTATGGTTTTAATGGGTTGCACCAATATTACTGCTGGCATGCTTGAGAAAATTCTTCTTTCGTTTCCTGGTTTATCTACAGTAGACATTAGAGGGTGCAGCCAGTTTGGAGAGCTGACTCCTAAATTTACCAATGTGAAATGGATCAAGAGCTGGAGTTCACATATAACCAAAATTGCAGAGGAGCCACATAAAGTTAGAAGCCTTAAACAGATTGCTGAGCAAACTTCATCTGTTTCTAAGGTCAGCAGTTTTGGTATTAGGGATGATTTTGGTGAGCTGAAGGATTATTTTGATAGTGTGGATAAGAGAGACACAGCGAAGAAATTATTCCGTCAAAACTTGTACAGACGGTCAAAATTATATGATGCTAGAAAGTCCTCCTCTATTCTATCTAGAGATGCTCGTATAAGACGATGGTCAATTAAGAAATCTGAAAATGGTTACAAGAGGATGGAGCAATTTCTTACTTCAAGACTGAGGGAAATTATGAAGGCAAACTCCTGTGACTTTTTTATGCCCAAGGTTGCAGAAATTGAggctaaaatgaaaaatggttaTTACAGTGGGCATGGGTTGAGCTATGTCAAGGAGGACATCAGTAGAATGTGCCGGGATGCAATAAAAGCAAAGAATCGGGGTGATGCTGGTGATATGAATCAtgttatcacattatttattcaGCTTGCAACATGGTTGGAAGGGCATTCCAAGTATGTGAATGACAGAGATGCACTAATGAAAATGTGGGGAAATGACCCATCATTGGCTTTCTGTTCTACTTCCTCTAAGTACAAGAAGAATAGATTGGTATCTGAGAGGAAGCATAGGAATAATGAAACACATGGTGGTTTGGATAATGGAGAATATGCCTCTGATAGAGAAATTAGGAGACGTTTATCAAAGTTGAATAAGAAATCTTTGGACTCAGAGAGTGAGACATCTGATGACTTTGATAGATCTTCTGAACATGGCAAGAGTGATAGTGATACTACCACCACCGATACTGAAAGTGACCAAGATGTccatttagaaaatcaaattggGGAGTCGAGAGGAGATGGATATTTCACACCTGATGGTGGGTTGGATTTCATTACCGATGAGCGTGAATGGGGGGCTCGCATGACGAAAGCAAGTTTGGTGCCTCCTGTTACTCGGAAATATGATGTCATTGATCAATATATCATTGTAGCCGATGAGGAGGATGTGCAAAGGAAGATGCGGGTTTCATTACCAGATGACTATGCAGAGAAGCTGAGTGCGCAAAAGAATGGCATTGAGGAGTCTGACATGGAACTGCCTGAAGTCAAGGATTACAAACCTAGAAAACAGCTTGAAAATGAGGTTGTTGAGCAAGAAGTTTATGGAATTGATCCCTATACACACAATCTTTTACTTGATTCTATGCCAGAGGAGTTGGATTGGTCTCTACAAGAGAAGCATTTGTTTATAGAAGACAAGCTCCTTCGGATGTTGAATAAGCAAGTTAGGTATTTTACTGGAACTGGTAACACTCCAATGAGCTACCCTTTGCAGCCTGTTATTGAAGAAATTGAAAGGTATGCAGAGGAGCACTGTGATGCAAGAACAGTGAGAATGTGTCAAGGTATCTTAAACGTCATAGAAAGTCGTCTGGATGACAAATATGTATCTTACAGAAAGGGGCTTGGTGTTGTTTGCAACAAGGAAGAAGGCTTTGGTGAAGATGATTTTGTTGTGGAGTTTCTAGGAGAGGTGTATCCTGTGTGGAAGTGGTTTGAGAAACAAGATGGGATTCGATCTCTGCAGAAAAATAGTAATGAACCAGCACCGGAATTCTATAACATCTACCTTGAAAGGCCAAAGGGTGATGCTGATGGGTATGACTTAGTTGTCGTTGATGCCATGCATAAGGCTAACTATGCCAGTCGGATATGTCATTCATGCAGACCTAATTGTGAAGCAAAAGTTACTGCTGTTGATGGTCATTATCAAATTGGTATTTATAGTGTTCGTAAAATTCAACATGGTGAGGAGATCACTTTTGATTACAATTCTGTTACAGAGAGCAAGGAGGAATATGAAGCTTCGGTTTGTTTGTGTGGAAGCCAAGTTTGTCGTGGGAGCTATCTGAATCTGACTGGCGAAGGGGCTTTCCAAAAGGTACTGAAGGAGTGGCATGGAATTCTTGATCGTCATTATTTGATGCTAGAAGCTTGTAAATTAAACTGTGTTTCTGAAGAGGACTATAATGACCTGGGAAGAGCTGGTTTAGGCAGTTGTTTACTTGGAGGTTTGCCAGATTGGCTAGTTGCCTATGCAGCTCGCCTTGTGAgatttatcaattttgaaagaACGAAACTTCCTCAGGAAATTTTAAAGCATAAtcttgaagagaaaagaaaatatttttctgatATCTATCTTGAAGTTGAAAGGAGTGATGCAGAGGTTCAGGCTGAGGGTGTATACAATCAGAGGCTTCAAAATCTTGCTGTCACTCTTGATAAGGTAAGGTATGTTATGAGGTGTATTTTTGGTGATCCACTGAAAGCTCCACCTCCTCTTGAGAAGCTCAGTCCTAAAGCAGTTGTTTCCTTCCTCTGGAAAGGAGAGGATTCATTTGTTGAAGAGCTTCTTCGGTGCCTGGCCCCTCATGTTGAAGAGTCTACCTTGAATGATCTCAAGTCCAAAATTTATGCTCATCATCCTTCAAGTTCTGGAGATATTCAAAAGGAGGTTCAAAAATCTCTTTTGTGGTTGAGGGATGAGGTTCGAAACCTTCCTTGTACATACAAATGTCGGCATGATGCTGCTGCTGACTTAATCCATATTTATGCTTATACCAAGTACTTCTTTAGAATACGGGATTATCAAACTATTACTTCACCACCTGTCTATATTAGTCCACTTGACTTAGGTCCTAAGTATGCTGACAAATTGGGAACAGGATTTCAGGAGTATCGAAAGTTATATGGTGAAAATTATTGTTTAGGGCAACTGATTTTTTGGCATAATCAGAGTAATGCAGAGCCAGATTGTACCCTGGCTAGAGTAAGTAGGGGTTGCTTGTCATTACCAGACATCAGTTCCTTTTATGCCAAAGCTCAAAAGCCTTCACGACATCGTGTTTATGGTCCAAGGACTGTCAGATCTATGCTGGCAAGAATGGAGAAGCAGCCCCAGAGACCTTGGCCCAAAGACCGGATATGGTCATTCAAAAGCTCTCCGAAATTTTTTGGCAGCCCAATGTTAGACGCTGTAATTAATAACTCTCCACTTGACAGGGAGATGGTTCATTGGTTGAAGCACAGACCTGCAAAATTCCAGGCTATGTGGGACCAGTGA 7182 0.4146 MGDGGVACMPLQQQQQHVMERLPNATEKALCGGKSGNGFSSGLVKVAGKRKKKKVKVKRKVAPAAKKVVKGELALDTVSSGGGNDVESGEVCGEMDEVEEGELGTLKWPGCELENREFVVEKPVPPMRRSEIENGEIVSERWKKGEVERGEFVSGKWRKEDVGKGEIVVEKGRKGETEKGEYGSWRGGINDDIEKGEFIPDRWHRGDMGKDDYGYARIHRYQSGRDKGWKSERERTPPSGRYSGDEYFRKKELNKSGSQHAKSAPRWESGQERNTRISSKIVDEEKNEHSNSRTHTRDYSSGSRLKRHGNELENCERNYGDYASLKCRRLTNDSSRHAYSEHYSRLSMERSCRNSSSKSSADKYSSRHHESSLPTKSVYDKHGRSPGHSERSPRDRARYYDHKDRTPVRRSPYGRDRSPYNREKSPHGRERSPYNRNWDRSRHHDHKMRSPTRSERSPQDRGRHHDRRDHTPNLIEQSPRDRTRPNIHREIRSKTLSSEKHKSQHSCKDHEDKHIQKESNLSDIESQGERNVHNASKSIEKDVCSEPEKEQQSSSPTVSCKDSPCLEPPPEELPSMEEDMDICDTPPHVPVVMDSSSGKWFYLDYDGVEHGPSKLSDIKVLVDDGVLMSDHFIKHIDSDRWLTVENAVSPLAAQSFPSVVSDSITQLVNPPEAPGNLLADSGDILQSGPENYQGIPAPFLQPMLCSEDSGIVSELLEDLHIDERVGVLLEGYDVIPGREFEAIKEALQMNFEYAKWEGLGEFEGFPWHDTCLRMEHDSRIDSSKEYESQGSIPSDKDNGFTLGVLGDWFSARWSCKGGDWKRNDDTQDRYCNKKLVLNDGFSLCQMPKSGCEDPRWTRKDDLYYPSHSRRLDLPLWAFCTDERVDCSAVTLSKPVQTKLASVRGVKGNILSVVRINACVVKDQGSLVSESCHKTRGKDRYHSRSTRSFSSTSDSKRSSTEEDSQSKAFNDQGSRGSCRSMEFINIPKDHLCAVHDLQLHLGDWYYLDGSGRERGPSSFSELQHLVDQGIVKKYSSVFRKYDKLWVPVTSSAETYDVSLRRHQESSTVSSECSGRPSKPIHGASFSEPDQKSILFNSLHPQFVGYTRGKLHELVMRSYKSREFAAVINEVLDPWINARQPKKEIEKQIYWKSGDGHASKRAWMLVDDSEQDSDFEDGSLTIGEDESTFEALCGDATFAGEGSNITDSKAGSWGLLDGQMLARVFHCLRSDLKSLVFASMTCKHWRATVRSYKEVSRHVNLSSLGHTCTDSIMWSILNAYEKDKIGSMVLMGCTNITAGMLEKILLSFPGLSTVDIRGCSQFGELTPKFTNVKWIKSWSSHITKIAEEPHKVRSLKQIAEQTSSVSKVSSFGIRDDFGELKDYFDSVDKRDTAKKLFRQNLYRRSKLYDARKSSSILSRDARIRRWSIKKSENGYKRMEQFLTSRLREIMKANSCDFFMPKVAEIEAKMKNGYYSGHGLSYVKEDISRMCRDAIKAKNRGDAGDMNHVITLFIQLATWLEGHSKYVNDRDALMKMWGNDPSLAFCSTSSKYKKNRLVSERKHRNNETHGGLDNGEYASDREIRRRLSKLNKKSLDSESETSDDFDRSSEHGKSDSDTTTTDTESDQDVHLENQIGESRGDGYFTPDGGLDFITDEREWGARMTKASLVPPVTRKYDVIDQYIIVADEEDVQRKMRVSLPDDYAEKLSAQKNGIEESDMELPEVKDYKPRKQLENEVVEQEVYGIDPYTHNLLLDSMPEELDWSLQEKHLFIEDKLLRMLNKQVRYFTGTGNTPMSYPLQPVIEEIERYAEEHCDARTVRMCQGILNVIESRLDDKYVSYRKGLGVVCNKEEGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNSNEPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYSVRKIQHGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKVLKEWHGILDRHYLMLEACKLNCVSEEDYNDLGRAGLGSCLLGGLPDWLVAYAARLVRFINFERTKLPQEILKHNLEEKRKYFSDIYLEVERSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCIFGDPLKAPPPLEKLSPKAVVSFLWKGEDSFVEELLRCLAPHVEESTLNDLKSKIYAHHPSSSGDIQKEVQKSLLWLRDEVRNLPCTYKCRHDAAADLIHIYAYTKYFFRIRDYQTITSPPVYISPLDLGPKYADKLGTGFQEYRKLYGENYCLGQLIFWHNQSNAEPDCTLARVSRGCLSLPDISSFYAKAQKPSRHRVYGPRTVRSMLARMEKQPQRPWPKDRIWSFKSSPKFFGSPMLDAVINNSPLDREMVHWLKHRPAKFQAMWDQ 2393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2220 2393 MobiDBLite consensus disorder prediction 277 315 - -
Ssu3g2220 2393 MobiDBLite consensus disorder prediction 937 975 - -
Ssu3g2220 2393 MobiDBLite consensus disorder prediction 224 581 - -
Ssu3g2220 2393 MobiDBLite consensus disorder prediction 362 524 - -
Ssu3g2220 2393 MobiDBLite consensus disorder prediction 534 548 - -
Ssu3g2220 2393 MobiDBLite consensus disorder prediction 1553 1644 - -
Ssu3g2220 2393 Pfam Protein SET DOMAIN GROUP 2 C-terminal 1974 2393 IPR045606 -
Ssu3g2220 2393 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 1 2393 - -
Ssu3g2220 2393 SMART set_7 1829 1969 IPR001214 GO:0005515
Ssu3g2220 2393 MobiDBLite consensus disorder prediction 258 276 - -
Ssu3g2220 2393 CDD SET_SETD2-like 1831 1985 - -
Ssu3g2220 2393 SUPERFAMILY SET domain 1837 1986 IPR046341 -
Ssu3g2220 2393 MobiDBLite consensus disorder prediction 330 348 - -
Ssu3g2220 2393 Gene3D SET domain 1809 1994 IPR046341 -
Ssu3g2220 2393 MobiDBLite consensus disorder prediction 1557 1632 - -
Ssu3g2220 2393 ProSiteProfiles SET domain profile. 1824 1963 IPR001214 GO:0005515
Ssu3g2220 2393 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 1 2393 - -
Ssu3g2220 2393 MobiDBLite consensus disorder prediction 224 257 - -
Ssu3g2220 2393 Pfam SET domain 1908 1963 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2220 Ssu-Chr3 71806602 71829133 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu3g2220 SET 4.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2220 K22748 - gmx:100781921 4266.46