Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2216 ATGGAATTGACAAGACCCAGTTATGCGGTTGTTTATGTCATTCTCCTTTGTGCGTTGGCCCAAGGGGGCTCAGAGGGGAAGGGGGGGAAGGAAGAGGAGTTTTCTACAGATAGTGGAGCTTTGACATCATCCATTTATGTGCATGGAATAAAGGTAGAGAATGAATTGAAACATTGTAGGAAAGAATTGATAGAGAAGAACAATGGTGTCAAAGATTTTGACTTGCATCCGCAGGAAGGGAGCAGTGACATGAGGactaaagaaaataacatacaaaaagaaacaaagtctCTGTCTCTCCATATGGAAGAAACTTTGGACTGCATAAGAACTAGTACTACTCCTCCTGCTTCTGTTTCAGAAAAGAAGGGTAGCTCTAGATATTTGTTGACAAAGCATTCTGAATCGACCTTGGGTGTGGAAAGAGGTCATGGAAGAAATTTGATTGCTGATTCACCAAATAATCAAATGGCTCCGAGTCCTTCTGCTGCTGTGGGATCACCAAGTCACGGTCCAACACCAGCCAGTTCTCCATCATCATTAACTCCATCATCGCGGACTCCGCGTCCCCAAGGTGTGGATTTACCACTCCCTCCAGATATGTTTGTACCATTTCCACCACTACCCCATGTACCTCATCCTCCTCCTCAAAAAAGTTCTCGACCTATAGCATATGCTCCTGTTCCTTCACCACCTAGCAAGGATGACAAAAAGAGGCTAACAGTTATTATAGCTGCCACTATATCAGGGGTTATCATCTTGATAGGCTTGGTCCTCTGCTATCGTGAGGCCAGAAGCAACAAAGCTGACAGAGATGACAGGCCTTTGCTCGTAGTAACCTCAAGTGATTATTCTGGTGgTTCAGATAAGGTTGTTCGATTGGGAGATTCTGACAAGGAAGAATCTGACATTGGCAATGGAAAGAACCCTTCTAATGTTAGAAATTGGTCCATTAAGGGTGGAGATAACAAAGCCTCACTTATTGGCACAACAGCATCAGAAGGTGTAGAACAAGTACCAGTGCTTCCTAATGGAAAACCTGCCCCTCCACCTCCTggaccaccaccaccaccacctccaaagCGGCCACCGCCTCCTGCACCACGTGCACCACCACCTCCAAGAGGTGCTCATCCTCCACCTGCTCCTCCCAAACCAATGGCAGGTAGGAATCAAGGACCACTACTTTCTAAAGAAGGAAGTTCAAGTGAGGGTGATGCTCCAAAACCAAAACTAAAGCCATTTTTCTGGGATAAGGTTAATGCAAAACCTGACCAATCAATGGTGTGGCATGAGATCAGTGCAGGATCATTCGTGATCAATGAGGAGATGATGGAGTCTTTATTTGGCTGCACCAACCAGCACAAGAATGAACGCAAAAAAGATTCACCATCTGTAGATACTTCAGTGCATTATATTCAGATTATTGACCCTAAGAAAGCACAGAACTTATCAATTCTTTTGCGAGCTCTGAATGTGACAACAGAAGAAGTTATTGATGCTCTTAAAGAAGGTAATGAGATTCCTGTGGAGCTCATCCAGACGTTGTTGAAGATGGCACCTACAACAGAAGAGGAATTGAAGCTTAGGCTATTCACAGGACAACTGTCTGAACTAGGCCCCGCAGAGAGGTTTCTCAAAGTGTTGGTTGACATTCCATTCGCTTTCAAACGTCTTGAATCTCTCATGTTCATGTTTATCCTTCAAGAAGAGTTCCAAAGCACTAAGGACTCCTTTGCCACATTAGAGGTTGCTTGCAACGAACTCAGAAAAAGCAGGCTATTCCTGAAACTCCTAGAAGCAGTTCTCAAAACGGGCAACCGCATGAACGACGGAACCTACCGCGGAGGCGCGCAAGCATTCAGGCTCGACACCCTTCTGAAACTCTCCGACGTAAAAGGAACAGACGGTAAGACAACACTCCTACACTTCGTCGTTCAGGAAATCATTCGCTCCGAGGGAATACGAGCCGTGCGCACGGAACGAGCCAGCAGAAGCATTTCCAGCGTTGGACTTGGAGCCGACGACTCCGACGAAGGAACCGAAGAATCCGAAGATCACTACCGCAGCCTCGGACTCCAGGTGGTTTCCGGCCTGAGCACCGAGCTGGAGGACGTGAAGAAGGCAGCGCTCGTCGACGGCGACGCGCTCAGCGCCGCGGTGTCGAAACTCGGCCACTCGATGGCGAAGACCCAGGAGTTCCTGAACACCGACATGAAGAGCCTCGGGGAAGAGAGCGAGTTCCGCCGCAGCATGGAGAGGTTTATGGACAAGGCGAGGGAGGAGGTGACGTGGCTGGTGGAGGAGGAGAAGAGGATAATGGCTTTGGTTAAGAGCACCGCGGATTACTTTCACGGGAACGCGGGGAGGGACGAAGGGCTGCGTTTGTTCCTGATCGTGCGTGATTTCTTGATAATACTGGACAAGGTGTGCAGAGAGGTGAGGGACACCACCGTGAAGTTGGCCAAGGCTTCGAGCAATAGCAAGAAAGAGGCCACTTCTTCGGTTTCGCCACCTGACTCGCCTGGCCAACACTCGCAGCCGCCGCCGCCGCCTAGTGATCTCCACAGGAGGCTGTTTCCGGCGATTGCGGAGAGGAGAGTGGATTACTCTAGctctgatgatgatgaagaggaCTTCTAG 2643 0.4741 MELTRPSYAVVYVILLCALAQGGSEGKGGKEEEFSTDSGALTSSIYVHGIKVENELKHCRKELIEKNNGVKDFDLHPQEGSSDMRTKENNIQKETKSLSLHMEETLDCIRTSTTPPASVSEKKGSSRYLLTKHSESTLGVERGHGRNLIADSPNNQMAPSPSAAVGSPSHGPTPASSPSSLTPSSRTPRPQGVDLPLPPDMFVPFPPLPHVPHPPPQKSSRPIAYAPVPSPPSKDDKKRLTVIIAATISGVIILIGLVLCYREARSNKADRDDRPLLVVTSSDYSGGSDKVVRLGDSDKEESDIGNGKNPSNVRNWSIKGGDNKASLIGTTASEGVEQVPVLPNGKPAPPPPGPPPPPPPKRPPPPAPRAPPPPRGAHPPPAPPKPMAGRNQGPLLSKEGSSSEGDAPKPKLKPFFWDKVNAKPDQSMVWHEISAGSFVINEEMMESLFGCTNQHKNERKKDSPSVDTSVHYIQIIDPKKAQNLSILLRALNVTTEEVIDALKEGNEIPVELIQTLLKMAPTTEEELKLRLFTGQLSELGPAERFLKVLVDIPFAFKRLESLMFMFILQEEFQSTKDSFATLEVACNELRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIRAVRTERASRSISSVGLGADDSDEGTEESEDHYRSLGLQVVSGLSTELEDVKKAALVDGDALSAAVSKLGHSMAKTQEFLNTDMKSLGEESEFRRSMERFMDKAREEVTWLVEEEKRIMALVKSTADYFHGNAGRDEGLRLFLIVRDFLIILDKVCREVRDTTVKLAKASSNSKKEATSSVSPPDSPGQHSQPPPPPSDLHRRLFPAIAERRVDYSSSDDDEEDF 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2216 880 PANTHER FORMIN-LIKE PROTEIN 1 878 - -
Ssu3g2216 880 Gene3D Formin, FH2 domain 408 837 IPR042201 -
Ssu3g2216 880 SUPERFAMILY Formin homology 2 domain (FH2 domain) 354 820 - -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 192 229 - -
Ssu3g2216 880 Pfam Formin Homology 2 Domain 406 807 IPR015425 -
Ssu3g2216 880 ProSiteProfiles Formin homology-2 (FH2) domain profile. 402 833 IPR015425 -
Ssu3g2216 880 SMART it6_source 402 822 IPR015425 -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 339 410 - -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 306 327 - -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 149 189 - -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 111 236 - -
Ssu3g2216 880 PRINTS Proline rich extensin signature 347 372 - -
Ssu3g2216 880 PRINTS Proline rich extensin signature 176 188 - -
Ssu3g2216 880 PRINTS Proline rich extensin signature 211 232 - -
Ssu3g2216 880 PRINTS Proline rich extensin signature 156 172 - -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 284 327 - -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 842 856 - -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 111 133 - -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 822 858 - -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 343 388 - -
Ssu3g2216 880 PANTHER FORMIN-RELATED 1 878 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu3g2216 880 MobiDBLite consensus disorder prediction 822 841 - -
Ssu3g2216 880 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2216 Ssu-Chr3 71734539 71739831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2216 406 869 FH2 protein (formin) Gene Family AT5G54650 63.034 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2216 - - lja:Lj3g3v2888350.1 1044.65