Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2211 ATGGTAAGGAGTGCAACTTGCATGCACAAGTTAGTGAAAAACCACAATAAAGGGGATGGATCCAAGTCCCTGGCTGGTACACTGGCGAGATGGAAAGAATATAATGCCTGGCTCGAATCTAGCAATGAGGCTGAGAAGCCGGTTAGGAAGGTTCCTGCCAAGGGATCAAAGAAGGGGTGTATGAAAGGCAAAGGAGGGCCTGAGAACTCGCGCTGTAACTACAGAGGAGTTAGGCAAAGGACTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCAAACAGAGGGAGTAGGCTCTGGTTGGGTACATTTCCCACTGCCATAAGTGCTGCTTTTGCTTATGATGAAGCAGCAAGGGCAATGTATGGTTCTTGTGCACGCCTCAACTTTCCCAATGTTCAAGTTTCAACTTTCTCTGCTGAGGACTCTTCAAGAAATTCTCCACCTGCTAATCAATCTGGTTCTGCATTGACGATATTAGAGAGTTCTGAGTGCATGATACCGCTGAACAACTCTGGGGCAGACACTGCGGAGGATGATGACATGGAAGGCCTTTCCTTATCCTTAAGTGTGAAACATGAGGAAGGGGAGGATGAATGA 597 0.4774 MVRSATCMHKLVKNHNKGDGSKSLAGTLARWKEYNAWLESSNEAEKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAISAAFAYDEAARAMYGSCARLNFPNVQVSTFSAEDSSRNSPPANQSGSALTILESSECMIPLNNSGADTAEDDDMEGLSLSLSVKHEEGEDE 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2211 198 Gene3D AP2/ERF domain 73 132 IPR036955 GO:0003700|GO:0006355
Ssu3g2211 198 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Ssu3g2211 198 MobiDBLite consensus disorder prediction 184 198 - -
Ssu3g2211 198 SUPERFAMILY DNA-binding domain 73 130 IPR016177 GO:0003677
Ssu3g2211 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 169 - -
Ssu3g2211 198 MobiDBLite consensus disorder prediction 47 68 - -
Ssu3g2211 198 CDD AP2 72 132 IPR001471 GO:0003700|GO:0006355
Ssu3g2211 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 169 - -
Ssu3g2211 198 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Ssu3g2211 198 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Ssu3g2211 198 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Ssu3g2211 198 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Ssu3g2211 198 MobiDBLite consensus disorder prediction 167 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2211 Ssu-Chr3 71698567 71699163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2211 10 130 AP2-EREBP Transcription Factor Family AT2G40350 56.800 7.35e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu3g2211 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2211 - K09286 gmx:100783729 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0831 8 13937437 13937901 Ssu3g2211 3 71698567 71699163 PCT