Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2205 ATGCAAAGTTCAAGGGATAAGTTTCTGCCTTTCAACCAGTCATTTCCATTTCATCTTACTGGCAATTGCTATGCTGATCCAAGCATTTTTAGTTCTAATGCTCCCATGAAACATGGAGTAGAAATAGAATTGAGTTGGGAGCCACCATTAGAGCCTATTTGCTCTTCATTGTTGGACTGCAAGGACTGGCCAAATTCAACTTGCAACACTACTAGTGATAGCAAGAAGAGATGCCTTTGCAACGCAAACTTTCTTTGGGATGGATTGAAATTAAACTGTACTCTAGAAGGCAAGCATAGCTATCAATCTGAAAGGCAACTGTCCTTACCTAAGATCATTGTAATTACTTTTACAACTGTGATTGGCTTAATTCTTCTCTCAACTACTGTTACATGTGTTTACTTGCGGAACAGAAGACAGGCCAAAACACAAGAAATCAGGGGATATGTTCAGAAAAACTCAGGGATTAACTTGTATAACAGTGAGAGATATGTCAGAGACTTGATTGAATCTGGCAGGTTCAAAGGGGATAATGCACAAGCCATAGATATTCCATATTTCCATTTGGAAAGCATACTCGATGCTACTAATAACTTTGCAAATTCAAACAAGCTTGGACAAGGAGGGTTTGGTCCTGTCTACAagGGAAAGTTTCCTGGAGGGCAAGAAATAGCAGTAAAGAGGCTTTCAAGTTGTTCTGGACAAGGTTTAGAAGAGTTTAAAAATGAAGTTGTGTTGATTGCCAAGCTTCAACATAGAAACCTAGTTCGACTTCTGGGGTACTGTGTGGAAGGAGATGAAAAGATGCTAGTATATGAATATATGCCAAATAGAAGCTTGGATGCTTTCATTTTTGACCGAAAGCTGTGTGTTCTATTAGACTGGGATGTGCGGTTCAAGATTATTTTGGGGATTGCTCGGGGGCTCCTTTATCTACATGAAGATTCTAGGTTGAGGATTATTCATAGGGACTTGAAATCAAGCAACATTCTACTAGATGAAGAGAAGAATCCCAAAATCTCAGACTTTGGCTTAGCCAGGATTTTTGGGGGGAAAGAGACAGTAGCCAACACAGATAGAGTGGTTGGAACATATGGGTATATGTCTCCAGAGTATGCACTTGATGGACATTTTTCAGTCAAGTCTGATGTCTTTAGCTTTGGTGTGGTGGTACTTGAGATTATTAGTGGAAAAAGGAACACAGGATTTTATCAAGCAGAACATGAATTGAGTCTTCTAGGATATGCATGGCTTTTGTGGAAAGAAGGAAGGGCATTGGAGTTCATGGACCAGACACTATGTCAAACATGCAATGCAGATGAATGCTTGAAAGGTGTGAATGTGGGGCTCTTGTGCTTACAAGAAGATCCAAATGAACGCCCCACCATGTCAAATGTGGTTTTCATGCTTGGAAGTGAATCTAACACTCTTCCAAGTCCTAAGGAACCAGCTTTTGTTATCAAGAGATGCCCTTCAAGTAGAGCATCTACTTCAAGTAAACTGGAAACCTTTTCACGAAATGAATTGACAGTCACTATAGAAGATGGCAGATAG 1554 0.3996 MQSSRDKFLPFNQSFPFHLTGNCYADPSIFSSNAPMKHGVEIELSWEPPLEPICSSLLDCKDWPNSTCNTTSDSKKRCLCNANFLWDGLKLNCTLEGKHSYQSERQLSLPKIIVITFTTVIGLILLSTTVTCVYLRNRRQAKTQEIRGYVQKNSGINLYNSERYVRDLIESGRFKGDNAQAIDIPYFHLESILDATNNFANSNKLGQGGFGPVYKGKFPGGQEIAVKRLSSCSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKMLVYEYMPNRSLDAFIFDRKLCVLLDWDVRFKIILGIARGLLYLHEDSRLRIIHRDLKSSNILLDEEKNPKISDFGLARIFGGKETVANTDRVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQAEHELSLLGYAWLLWKEGRALEFMDQTLCQTCNADECLKGVNVGLLCLQEDPNERPTMSNVVFMLGSESNTLPSPKEPAFVIKRCPSSRASTSSKLETFSRNELTVTIEDGR 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2205 517 SUPERFAMILY Protein kinase-like (PK-like) 181 470 IPR011009 -
Ssu3g2205 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Ssu3g2205 517 ProSiteProfiles Protein kinase domain profile. 199 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2205 517 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 79 513 - -
Ssu3g2205 517 SMART serkin_6 199 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2205 517 Gene3D Transferase(Phosphotransferase) domain 1 275 481 - -
Ssu3g2205 517 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 79 513 - -
Ssu3g2205 517 Pfam Domain of unknown function (DUF3403) 472 517 IPR021820 GO:0004674
Ssu3g2205 517 Pfam Protein tyrosine and serine/threonine kinase 202 468 IPR001245 GO:0004672|GO:0006468
Ssu3g2205 517 Gene3D Phosphorylase Kinase; domain 1 168 274 - -
Ssu3g2205 517 CDD STKc_IRAK 205 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2205 Ssu-Chr3 71591336 71594159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2205 177 488 Receptor kinase-like Gene Family AT4G23230 58.307 3.29e-128 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g2205 PK_Tyr_Ser-Thr 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2205 - - gmx:100775297 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0838 8 14071477 14075354 Ssu3g2205 3 71591336 71594159 PCT
Ssu3g2205 3 71591336 71594159 Ssu8g0836 8 14047977 14050999 PCT