Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2203 ATGAAGAAGTGCGAGCTGTGCAAGGTTCCGGCGCGGGTTTTCTGCGAGTCGGACCAGGCAAGCTTGTGCTGGGACTGCGACGCCAAGGTTCACGGCGCCAACTTCTTGGTCGCGAGGCACTCTAGGACTCTCCTCTGCCGCACGTGCCGCTCGCACACGCCGTGGAAGGCCTCCGGCGCCAGACTCACCAGCGCCGCCTCCGTCTGCGAGCGTTGCGCCGCCGCGGAGAGCGAAGGGGGCAATGACGAGGAAATAGTAGACACCGACGACGACGAGGAGGACGTTGACGATGTCGACGGCGACGAGGACGGCGACAACCAGGTCGTGCCGTGGTCCTCCACGACGCCGCCCCCGCCGGCGAGCTCCTCCGGCAGCGAATGGTCCTCGCTTAGCGGGTGCAAAAACGACGACGAAGATGTTTCTGTTTCTGAACCAGAAACGACAACGTCCTCGTTGAAACGACAGCGCGAGGATGATGATGCTTCCGATCGTGATCCccagGGGGGTGAGAAGGGTTGCGCGTCTCAACGGAGGTGGCTTGCGACGGAGAATCGGCGTCGAAGGAGTGATTGA 573 0.6248 MKKCELCKVPARVFCESDQASLCWDCDAKVHGANFLVARHSRTLLCRTCRSHTPWKASGARLTSAASVCERCAAAESEGGNDEEIVDTDDDEEDVDDVDGDEDGDNQVVPWSSTTPPPPASSSGSEWSSLSGCKNDDEDVSVSEPETTTSSLKRQREDDDASDRDPQGGEKGCASQRRWLATENRRRRSD 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2203 190 PANTHER - 1 181 - -
Ssu3g2203 190 SMART bboxneu5 1 45 IPR000315 GO:0008270
Ssu3g2203 190 MobiDBLite consensus disorder prediction 150 171 - -
Ssu3g2203 190 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Ssu3g2203 190 MobiDBLite consensus disorder prediction 80 104 - -
Ssu3g2203 190 MobiDBLite consensus disorder prediction 79 190 - -
Ssu3g2203 190 CDD Bbox1_BBX-like 3 45 - -
Ssu3g2203 190 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Ssu3g2203 190 MobiDBLite consensus disorder prediction 118 136 - -
Ssu3g2203 190 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2203 Ssu-Chr3 71569917 71570584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2203 2 120 C2C2-CO-like Transcription Factor Family AT4G27310 41.718 2.35e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu3g2203 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2203 - - gmx:100782655 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0839 8 14101795 14102920 Ssu3g2203 3 71569917 71570584 PCT