Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2199 ATGGACAACATGAGGAACAAACCACAGTTCTGGCTTTCTCTCCTCATCACAGGCTTCTCTTTCCACACCTCCCTCGCTGCTTTGACCACCATCTCGGCAAACCAGTCTCTCTCCGGGGATCAAACTCTTGTCTCCCAAGGTGGCCACTTCGAATTGGGTTTCTTCAACGAAGGTAACAACTCTAAACACTACATAGGCATGTGGTACAAAAAGATATCTATGAGGACTTATGTGTGGGTAGCAAATAGAGACAATCCAGTTTCTGATAAGAATTCTGCCAAGTTAACAATATTGGATGGTAATTTAGTGCTCTTAGACCAGTCCCAAAATATAGTTTGGTCAACGAATTTGAGTTCTCCCAGCTCAGGTTCTGTAGTAGCTGTGCTTCTAGATTCTGGGAATCTTATATTAAGCAATAGGCCTAACGCATCACAATCAGATGCTATGTGGCAGAGTTTTGATCACCCCACAGATACATGGCTTCCTGGTGGCAAGATAAGATTGGATAACAAAACAAAGAAGCCACAGTATCTGACTTCATGGAAGAACAATGATGATCCTGCAACGGGTTTATTCTCTCTTGAACTAGACCCTAATGGAAGCAATGCATATCTGATTCTTTGGAATAAGTCTGAGCAGTATTGGACAAGTGGTGCTTGGGATGGACACATTTTCAGCTTGGTTCCTGAGATGAGATTGAACTACATCTACAATTTCACCTTTCAGTCCAATGAGAACGAGAGCTACTTCACCTACTCCGTGTATGACTCCTCTATCATATCGCGTTTTGTGATGCATGTCTCGGGGCAGGTCAGGCAACTTACGTGGCTGGACAATGCTCAGCAATGGAATCTGTTCTGGTCTCAGCCAAGGCAACAGTGTGATGTCTATGCCTACTGTGGTGGATTTGGGAGCTGCACTGAGAACGCCATGCCGTATTGCAATTGTTTGACTGGTTATGAGCCAAAGTCACAGTCTGATTGGAATCTTACGGATTACTCAGGAGGGTGTGTGAGAAAGACCAAGTTTCAATGTGAGACACCAAATTCCTCTAACAAGGACAAGGACAGGTTCCTACCATTTCTCAACATGAAGTTGCCTAATCATTCACAATCCATAGGAGCTGGGAGTGATGCGGAATGTGAAGCAATGTGCTTGAGTAACTGTTCCTGCACTGCATATGCTTTTGACACTAGTAGCTGTTCAATTTGGAACGGTGATCTCTTGAATCTGCAACAGCTTACTCAAGGTGATAGTAGTGGCCAGACTTTGTTTCTCAGGCTTGCAGCATCTGAGTTTCATGATCCTAAAGGCAAAAATGGGACAGTCATTGGTATTGTTGCTGGTGCAGTTGGTGTCATAGTGGTTCTTCTcctggtttttgtttttgtgatgCTGCGGCGCAGACAGAGGCATGTTGGGACCGGAACATCGGTGGAGGGATCATTGATGGCATTTGGGTACAGGGATTTGCAAAATGTCACAAAGGATTTCTCAGAGAAACTGGGAGGAGGGGGCTTTGGTTCTGTCTTCAAAGGAGCATTGCCTGATTCAAGTGTCATAGCAGTGAAGAAGCTTGAAAGCATTAGCCAAGGTGAGAAGCAGTTTAGGACAGAAGTGAGCACAATTGGGACGGTCCAACATGTCAACCTAGTAAGGCTTCGCGGGTTCTGTTCCGAAGGTACTAAGAAACTTCTGGTTTATGATTACATGCCAAATGGTTCCTTGGATTCCAAACTGTTTCAGGAAGATAGCTCCAAGGTGTTGGATTGGAAAGTGAGGTACCAAATTGCTCTTGGAACAGCAAGGGGGTTGACTTATCTACATGAGAAGTGTAGGGACTGTATCATACACTGTGATGTGAAGCCAGAGAATATTCTCCTTGATGCTGATTTTGTTCCAAAGGTGGCAGACTTTGGTCTTGCAAAGCTGGTTGGAAGGGACTTCAGCAGGGTCCTCACTACCATGAGAGGGACAAGAGGCTATCTTGCTCCTGAGTGGATTTCAGGTGTGGCTATCACTGCCAAAGCTGATGTTTACAGCTATGGAATGATGCTTTTTGAGTTTGTGTCAGGTAGGAGGAACTCTGAGGCATCAGAAGATGGCCAAGTGAGGTTCTTCCCTACCTTAGCTGCCAACATGGTGCACCAAGGAGGGAATGTGCTTACCTTGGTGGACCCTAGGTTGGAGGGAAATGCTGACGTTGAAGAGGTCACTAGAGTCATCAAAGTTGCTGCATGGTGTGTCCAAGATGATGAAACTCACAGGCCTTCCATGGGTCAGGTGGTTCAAATCCTTGAAGGGTTCTTGGATGTGACTTTGCCTCCAGTTCCAAGGACCCTCCAAGCCTTTGTTGACAACCAGGAGAACATAGTTTTCTTCACTGACTCCAGCTCCACACAGAGTTCACAGGTAAAGAGTAATGTCTCAAATGCCTCCTCTCAAGCCAAAAGCAACATCTCATCCAATAGCAACTAG 2478 0.4508 MDNMRNKPQFWLSLLITGFSFHTSLAALTTISANQSLSGDQTLVSQGGHFELGFFNEGNNSKHYIGMWYKKISMRTYVWVANRDNPVSDKNSAKLTILDGNLVLLDQSQNIVWSTNLSSPSSGSVVAVLLDSGNLILSNRPNASQSDAMWQSFDHPTDTWLPGGKIRLDNKTKKPQYLTSWKNNDDPATGLFSLELDPNGSNAYLILWNKSEQYWTSGAWDGHIFSLVPEMRLNYIYNFTFQSNENESYFTYSVYDSSIISRFVMHVSGQVRQLTWLDNAQQWNLFWSQPRQQCDVYAYCGGFGSCTENAMPYCNCLTGYEPKSQSDWNLTDYSGGCVRKTKFQCETPNSSNKDKDRFLPFLNMKLPNHSQSIGAGSDAECEAMCLSNCSCTAYAFDTSSCSIWNGDLLNLQQLTQGDSSGQTLFLRLAASEFHDPKGKNGTVIGIVAGAVGVIVVLLLVFVFVMLRRRQRHVGTGTSVEGSLMAFGYRDLQNVTKDFSEKLGGGGFGSVFKGALPDSSVIAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTKKLLVYDYMPNGSLDSKLFQEDSSKVLDWKVRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDADFVPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEASEDGQVRFFPTLAANMVHQGGNVLTLVDPRLEGNADVEEVTRVIKVAAWCVQDDETHRPSMGQVVQILEGFLDVTLPPVPRTLQAFVDNQENIVFFTDSSSTQSSQVKSNVSNASSQAKSNISSNSN 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2199 825 SMART ntp_6 353 428 IPR003609 -
Ssu3g2199 825 CDD STKc_IRAK 502 769 - -
Ssu3g2199 825 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Ssu3g2199 825 ProSiteProfiles PAN/Apple domain profile. 345 429 IPR003609 -
Ssu3g2199 825 Gene3D - 24 154 IPR036426 -
Ssu3g2199 825 Pfam Protein kinase domain 499 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2199 825 Gene3D Transferase(Phosphotransferase) domain 1 571 773 - -
Ssu3g2199 825 ProSiteProfiles Protein kinase domain profile. 496 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2199 825 SMART blect_4 34 156 IPR001480 -
Ssu3g2199 825 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Ssu3g2199 825 SUPERFAMILY Protein kinase-like (PK-like) 481 801 IPR011009 -
Ssu3g2199 825 CDD B_lectin 34 156 IPR001480 -
Ssu3g2199 825 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 8 796 - -
Ssu3g2199 825 MobiDBLite consensus disorder prediction 803 825 - -
Ssu3g2199 825 Gene3D Phosphorylase Kinase; domain 1 462 570 - -
Ssu3g2199 825 Pfam PAN-like domain 352 410 IPR003609 -
Ssu3g2199 825 SMART serkin_6 496 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2199 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Ssu3g2199 825 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 8 796 - -
Ssu3g2199 825 Pfam D-mannose binding lectin 76 182 IPR001480 -
Ssu3g2199 825 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Ssu3g2199 825 CDD PAN_AP_plant 350 429 - -
Ssu3g2199 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 187 IPR036426 -
Ssu3g2199 825 PIRSF SRK 4 818 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2199 Ssu-Chr3 71510247 71512724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2199 479 776 Receptor kinase-like Gene Family AT5G20050 44.586 1.55e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu3g2199 Pkinase 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2199 - - gmx:100782119 1422.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0841 8 14158105 14160270 Ssu3g2199 3 71510247 71512724 PCT