Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2197 ATGATGGTGAGAACCCCGAGCTGTGACAAAAATGGACTGAAGAAAGGAACATGGACACCTGAGGAAGACAAGAAGTTGGTTGATTATATTACCAGATATGGCCACTGGAATTGGCGCTTACTCCCCAAGTTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGCTGAATTACCTAAGGCCAAACCTCAAAAGAGGGAACTACActgaagaagaggaggaaactATAATCAAGCTGCACCGACATCTGGGGAACAGATGGTCTGCCATTGCTGCTCGGATGCCAGGAAGAACAGACAATGAAATAAAGAACCACTGGCACACCAACCTCAAGAAGCGGTATCAACAGGACTCTTTCTCAGTCACAAGAGCTCAGGTTTCCAATTCCAAGTCAAAGGACCAATCCCCAACTGAACCAACTGCAAATCCTTTCCAAAGCCTTCATACCGCGCAAGATTGTTCCCCATCCTCCTCCACAAGCACAGAGTATGCCACTGTCACCAGCAACGAAAATCTGGTTCTGGAAGATGAATTTGCCTTTTGGGATGCAGACACTGATCTTATGAGTGGAAACTTCTGGTTAGAACCGTATATGCTTGATATTTCCTACGTCTCTAGTGAACCCGAGTACTTTAGCCCAGTTTTTGATGCAGAACTTTGGAGCCATGATAACTGA 684 0.4474 MMVRTPSCDKNGLKKGTWTPEEDKKLVDYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYTEEEEETIIKLHRHLGNRWSAIAARMPGRTDNEIKNHWHTNLKKRYQQDSFSVTRAQVSNSKSKDQSPTEPTANPFQSLHTAQDCSPSSSTSTEYATVTSNENLVLEDEFAFWDADTDLMSGNFWLEPYMLDISYVSSEPEYFSPVFDAELWSHDN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2197 227 Gene3D - 70 143 - -
Ssu3g2197 227 Gene3D - 14 67 - -
Ssu3g2197 227 SMART sant 14 64 IPR001005 -
Ssu3g2197 227 SMART sant 67 115 IPR001005 -
Ssu3g2197 227 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Ssu3g2197 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Ssu3g2197 227 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Ssu3g2197 227 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Ssu3g2197 227 MobiDBLite consensus disorder prediction 126 164 - -
Ssu3g2197 227 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 205 - -
Ssu3g2197 227 CDD SANT 81 113 IPR001005 -
Ssu3g2197 227 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu3g2197 227 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 2 205 - -
Ssu3g2197 227 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Ssu3g2197 227 CDD SANT 17 62 IPR001005 -
Ssu3g2197 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2197 Ssu-Chr3 71393738 71395516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2197 2 205 MYB Transcription Factor Family AT2G31180 47.549 2.77e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g2197 Myb_DNA-binding 8.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2197 K09422 - gmx:100778518 389.423