Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2196 ATGGTGAGAACCCCATCTTGTGACAAAAGTGGACTTAGGAAAGGTACTTGGACTCCGGAGGAAGATAGCAAGTTAATTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAGGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTAAGGCCTAATCTGAAAAGAGGGAACTTcactaaagaagaagaagaatgcaTCATCAGAATGCACAAAAAACTTGGTAACAGATGGTCTGCTATTGCGGCTGAGTTACCTGGAAGAAcagacaatgaaataaaaaaccaTTGGCACACCAACCTCAAAAAGAGGCCTCAACAAAACACACTCACAAATGAAGAAGCCAGAGCCTCCAAATCAAAGGAAAAGGTTCCCAACAGTGGTGTTACTGTTACTCTTCCAGCTACTTCCCACATCTCAGATAATTCAGGCTCATTATCGCCACTTTCATCCTCCAGCAGCGAGTTTTCCTCCATAACTTCAGATCATTCCACTGCTGCCAGTATGGAAAATTTGGTGTTTGAAGATGACTTCGGTTTTCTGGATGCATACAACGAAAGTTTCTGGTCAGAGCTAAATCTGGATGACATTTCCTACAATGCGCCACGTGAAATAGTGTCAGGAGATTCTAATGGTGCTTTTCAAAGTACAGATTCTAGCCAGATCCTTGATTCTTGTGCATTGTCTCCGCATCGATCAACCAGCAAAAGTAGGGTTGTGGACAGCGACTTTGGAGGCTTTCTCGATGCATACGCAGAGGCAACCGTTGATAACTTTTGGACACAGCCATATGTTGCTGACATGGCCCACGTTCCAAGCAAACTACTTGTTCCCTCCATGGCAGAATCTGAATATTTTCTTCCAATATACGATGATCTGTGGGGTCAAAGTGATTTGTACGGTGAAAATCTTAGCTTATTCTAA 957 0.418 MVRTPSCDKSGLRKGTWTPEEDSKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWMNYLRPNLKRGNFTKEEEECIIRMHKKLGNRWSAIAAELPGRTDNEIKNHWHTNLKKRPQQNTLTNEEARASKSKEKVPNSGVTVTLPATSHISDNSGSLSPLSSSSSEFSSITSDHSTAASMENLVFEDDFGFLDAYNESFWSELNLDDISYNAPREIVSGDSNGAFQSTDSSQILDSCALSPHRSTSKSRVVDSDFGGFLDAYAEATVDNFWTQPYVADMAHVPSKLLVPSMAESEYFLPIYDDLWGQSDLYGENLSLF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2196 318 CDD SANT 69 112 IPR001005 -
Ssu3g2196 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu3g2196 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu3g2196 318 SMART sant 13 63 IPR001005 -
Ssu3g2196 318 SMART sant 66 114 IPR001005 -
Ssu3g2196 318 CDD SANT 16 61 IPR001005 -
Ssu3g2196 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu3g2196 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu3g2196 318 MobiDBLite consensus disorder prediction 134 169 - -
Ssu3g2196 318 MobiDBLite consensus disorder prediction 114 169 - -
Ssu3g2196 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu3g2196 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu3g2196 318 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 245 - -
Ssu3g2196 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu3g2196 318 Gene3D - 69 138 - -
Ssu3g2196 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 245 - -
Ssu3g2196 318 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2196 Ssu-Chr3 71299079 71351473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2196 1 203 MYB Transcription Factor Family AT2G31180 49.029 4.57e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g2196 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2196 K09422 - gmx:778184 491.886