Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2195 ATGGTAAGAGCTCCTTTCTATGACAAAAATGGACTGAAGAAAGGTGCATGGGGTAGAGAAGAAGACGAGAGGTTAAGAGCTTATGTTCAGAGATATGGTCATTCTAATTGGCGTCAACTCCCCAAGTTTGCAGGCTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGTTGGTTGAATTACTTGAGACCAAATCTAAAACATGGGAACTACACCCGAGAGGAAGAAGAAATAATCATCAAATTACACCAAGAACTTggaaataaATGGTCCTTGATTGCTGAAAAACTGCCTGGAAGAACAGACAATGAGGTAAAGAACTATTGGCATAGCCACCTGAAAAAGAGCTTAAAGAGCAATGAAATCACAACATCTGAGActcatcaatttaaaaaatctgaaAGCCGTGGTGCCGATGTTGGTGATGACTTCCCTTATATTTTAGAAAGCTCATTGGCCATGTCCACGGAAACGTCGGAAGGAGACAATTATCCCCTTACCTCTAATGTTGCACCATCAACCATGGACAGCTCCTTATCAAAAGAAGATAGTGTTCCTCCGTTGGTATCATACAAAGAATTCAGCGGCGATTTTTGGACTGAACCATTCCTCATAGAAGACACATATGCAGATGAGACATGTAGTGGTGAAGGCATAGCATTATTAATTCCAAACTTCGATGACACATATTTGTTGTAG 696 0.3966 MVRAPFYDKNGLKKGAWGREEDERLRAYVQRYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTREEEEIIIKLHQELGNKWSLIAEKLPGRTDNEVKNYWHSHLKKSLKSNEITTSETHQFKKSESRGADVGDDFPYILESSLAMSTETSEGDNYPLTSNVAPSTMDSSLSKEDSVPPLVSYKEFSGDFWTEPFLIEDTYADETCSGEGIALLIPNFDDTYLL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2195 231 CDD SANT 69 112 IPR001005 -
Ssu3g2195 231 CDD SANT 16 61 IPR001005 -
Ssu3g2195 231 PANTHER MYB TRANSCRIPTION FACTOR 1 210 - -
Ssu3g2195 231 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu3g2195 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu3g2195 231 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 210 - -
Ssu3g2195 231 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu3g2195 231 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Ssu3g2195 231 MobiDBLite consensus disorder prediction 155 181 - -
Ssu3g2195 231 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu3g2195 231 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu3g2195 231 Gene3D - 69 139 - -
Ssu3g2195 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu3g2195 231 SMART sant 13 63 IPR001005 -
Ssu3g2195 231 SMART sant 66 114 IPR001005 -
Ssu3g2195 231 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2195 Ssu-Chr3 71262213 71263791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2195 1 211 MYB Transcription Factor Family AT2G31180 43.868 5.05e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g2195 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2195 K09422 - gmx:100781032 254.218