Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2194 ATGGTAAGGGCtccttattttgataaaaatggaataaagaAAGGTGCATGGAGTGAGGAAGAGGATAAGAAGCTTATAGCTTACGTTGAGAGATACGGCCATCCTAATTGGCGTCAACTCCCAAAGTTTGCAGGGTTGGCAAGATGTGGAAAGAGTTGCAGGCTTCGTTGGATGAATTACCTGCGGCCAAATCTAAAACGAGGGAACTATACCCAGAAGGAAGAGCAAATAATCACTGATTTGCATAAAAAGCATGGAAATAAATGGTCTCTGATTGCTGAAAATCTACCTGGGAGAACGGACAACGAGATAAAAAACTATTGGCACAGCCACCTAAAGAAGTTCTTAAAGGGCAATGAGAACACCCCATGTGATGAGTTGAAGTCCAAGCCTAGTGAATGTACAGAATTTGAAAGGCCAATAAACGACCACCACATTTTGGAGAGTTCGGTGTCCGTTTCCTCCGAAACTTCGGAAGACAATTCCCCTTCATTTTCCTCTAGTCACACGGAATCAACCTTGAACTTGTCCAAGGAAGAAGAAAGTGTTGCTTCGTGGGAAACATTTGATGGATTTAGTAGCAATTTCTGGACTGAACCGTTTATTTCAGAAAACGCACTTAGTCAGGACTACTTTCCCGTTTCCTCTTACGGAACAGAACCGTTTTTCTTATGGTAG 678 0.413 MVRAPYFDKNGIKKGAWSEEEDKKLIAYVERYGHPNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNYTQKEEQIITDLHKKHGNKWSLIAENLPGRTDNEIKNYWHSHLKKFLKGNENTPCDELKSKPSECTEFERPINDHHILESSVSVSSETSEDNSPSFSSSHTESTLNLSKEEESVASWETFDGFSSNFWTEPFISENALSQDYFPVSSYGTEPFFLW 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2194 225 CDD SANT 69 112 IPR001005 -
Ssu3g2194 225 CDD SANT 16 61 IPR001005 -
Ssu3g2194 225 MobiDBLite consensus disorder prediction 150 173 - -
Ssu3g2194 225 Gene3D - 13 66 - -
Ssu3g2194 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu3g2194 225 SMART sant 66 114 IPR001005 -
Ssu3g2194 225 SMART sant 13 63 IPR001005 -
Ssu3g2194 225 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu3g2194 225 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Ssu3g2194 225 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu3g2194 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu3g2194 225 PANTHER MYB TRANSCRIPTION FACTOR 1 218 - -
Ssu3g2194 225 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu3g2194 225 Gene3D - 69 137 - -
Ssu3g2194 225 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu3g2194 225 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2194 Ssu-Chr3 71228259 71229494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2194 1 125 MYB Transcription Factor Family AT2G31180 64.000 1.48e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g2194 Myb_DNA-binding 4.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2194 K09422 - gmx:100781032 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2194 3 71228259 71229494 Ssu3g2194 3 71228259 71229494 ECH
Ssu8g0846 8 14288359 14291464 Ssu3g2194 3 71228259 71229494 PCT