Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2192 ATGGAGTTTGACCTTGAAAACCCTTTGGAAAACCTTCACTCAGAAGCTGTCTCTTACCTCTTTCTCATTGAATCTGACCACACCCCATCACAGAATCACTCTCACACTCTCCAAGCCAGAAATCTTGACATCACTGTCAGAAGAGAACTCATTTCTCTAATCTCACAGTTGTCCTGTACTTTGGATCCGGTTTTGTCTTACCTTGCTATCAACTATCTGGACCGGTTCCTAGCCAACCAAGGGATTTTGCAACCAAAGCCATGGGCCCTCAGACTCATTGCTGTCTCCTGCATTTCTCTAGCTGTCAAAATGATGAGAACTGAGTACTCTGCCACTGATGTCCAGaccCTATTGAATCAAAGTGATGGTGGCATCATCTTTGAGACACAAACAATACAAAGAATGGAAGCACTTGTCTTGGGAGCTCTACAATGGAGAATGCGGTCGATCACCCCCTTCTCTTTCGTAGCCTTCTTCATTGCCTTGTTTGGCCTCAAAGACTCACCAATGGGGCAGGTTCTGAAAAACCGAGCCTCTGAAATCATATTCAAGTCACAAAGAGAGATAAAGCTTTGGGAATTCAAGCCATCTATTATTGCTGCATCTGCCCTTCTGTGTGCTTCTCATGAGTTGTTTCCCTTCCAATATCCGTCCTTCTTAAAGGCACTATCCGATTCTTCAGACGTAAATAAAGAAAGCGTGGAGCAGTGCTACAAAGTGATACAAGACATAGCCATAGAGGAGGAGTACGAGTCTGCGTTGAATGGGGCTTCAAGGTCAGACACACCGGTTAACGTGTTGGACCATCATTGTTTGAGTTCAGAAAGTGAAAAAACCAACGGACTCACCATTGCTGATTCTCCTCTGAGACAAGAGACTCTCAAAAGAAGGAAAATCACTGCTTGTGGAAACAATCCAACGATCCACAATTCTTGGATCAAACCATGCTCAAGAACTACCGAAAGGAGGCAAGGTCAGCGCAAAGCAATAAGAGGGAAATCTCGCTGCATGAGCATGCATGTACTTTTGTTAACCGGAGATGGAAAATGCGTCTCTTGTCTCTGA 1065 0.4441 MEFDLENPLENLHSEAVSYLFLIESDHTPSQNHSHTLQARNLDITVRRELISLISQLSCTLDPVLSYLAINYLDRFLANQGILQPKPWALRLIAVSCISLAVKMMRTEYSATDVQTLLNQSDGGIIFETQTIQRMEALVLGALQWRMRSITPFSFVAFFIALFGLKDSPMGQVLKNRASEIIFKSQREIKLWEFKPSIIAASALLCASHELFPFQYPSFLKALSDSSDVNKESVEQCYKVIQDIAIEEEYESALNGASRSDTPVNVLDHHCLSSESEKTNGLTIADSPLRQETLKRRKITACGNNPTIHNSWIKPCSRTTERRQGQRKAIRGKSRCMSMHVLLLTGDGKCVSCL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2192 354 CDD CYCLIN 47 140 IPR013763 -
Ssu3g2192 354 PANTHER CYCLINS 5 285 IPR039361 -
Ssu3g2192 354 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 285 - -
Ssu3g2192 354 SUPERFAMILY Cyclin-like 13 147 IPR036915 -
Ssu3g2192 354 Pfam Cyclin, N-terminal domain 21 147 IPR006671 -
Ssu3g2192 354 SUPERFAMILY Cyclin-like 132 246 IPR036915 -
Ssu3g2192 354 Pfam Cyclin, C-terminal domain 150 249 IPR004367 -
Ssu3g2192 354 Gene3D - 30 148 - -
Ssu3g2192 354 SMART Cyclin_C_2 150 263 IPR004367 -
Ssu3g2192 354 SMART cyclin_7 48 141 IPR013763 -
Ssu3g2192 354 Gene3D - 20 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2192 Ssu-Chr3 71158594 71161111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2192 1 297 Core Cell Cycle Gene Families AT4G03270 42.357 4.71e-73 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2192 K18812 - gmx:100783875 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2192 3 71158594 71161111 Ssu3g2192 3 71158594 71161111 ECH
Ssu8g0848 8 14358660 14360380 Ssu3g2192 3 71158594 71161111 PCT