Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2188 atgggCATGGTAGCCAGACTATTAGCCCTTTCTCTGGTCCTAAATGTCATCCTTCTGCACATGTCTGGTGCTGCCGAATCCACAATTGCGAAACCACATATCCCCAACCCATCAACAGACTTCATCAAGTCCTCATGCGAGTCCACTAGCCACCCTATCGCATGCGTTCAAAGCCTCTTGAGGTACGCCAACATGATTTGCCAAAGCGAGCAACAACTAACCATTAAAGCCCTGTCTGTGAGCGTGTCCAAAACTCGATCATGCGCATCGTTTGTGAAGGAAATGGGCCCGGTGAAGGGGATGAAGCCTATAGAGCATAATGCAGTGCGAGACTGCATAGAGTTCATGGATGACAGCGTGGACCGTCTTAGCCAATCGGTTAGGGAGCTTCGGCTTTTGGGTAAGGCCGAGGGGAAGGATTTCGCGTGGCACATGAGTAATGTCCAGACTTGGGTTAGTGCCGCTATGACCAATCAGAAAACGTGTCTTGATGGGTTTGATGGGCCCCACGTGGATGCGAACTTGAAGGCTGCCATTAGGCCCAAAGTTGTGGACGTTTCTCAAGTCACTAGTAATGCCCTTGAATTGGTTAATCACTTTGCCTCCAAGAACCTTACtgttgcacaaactaaaatgcCATAA 642 0.4766 MGMVARLLALSLVLNVILLHMSGAAESTIAKPHIPNPSTDFIKSSCESTSHPIACVQSLLRYANMICQSEQQLTIKALSVSVSKTRSCASFVKEMGPVKGMKPIEHNAVRDCIEFMDDSVDRLSQSVRELRLLGKAEGKDFAWHMSNVQTWVSAAMTNQKTCLDGFDGPHVDANLKAAIRPKVVDVSQVTSNALELVNHFASKNLTVAQTKMP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2188 213 CDD PMEI-like_3 44 202 - -
Ssu3g2188 213 Pfam Plant invertase/pectin methylesterase inhibitor 40 195 IPR006501 GO:0004857
Ssu3g2188 213 PANTHER PECTINESTERASE INHIBITOR 9 19 204 - -
Ssu3g2188 213 PANTHER PECTINESTERASE INHIBITOR-LIKE 19 204 - -
Ssu3g2188 213 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 201 IPR035513 -
Ssu3g2188 213 SMART PMEI_2 37 196 IPR006501 GO:0004857
Ssu3g2188 213 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 200 IPR035513 -
Ssu3g2188 213 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2188 Ssu-Chr3 71070263 71070904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2188 42 206 Carbohydrate Esterase AT3G14310 28.916 1.92e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2188 - - gmx:100789460 259.61