Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2187 ATGGGAAGGGTTCCTTGCTGTGATAAGAATGAACTCAAGAAGGGTCCATGGACACCAGAGGAAGACCTTAAACTCACCAACTACATTCAGATTCATGGACCAGGCAATTGGCGATCCCTCCCTAAAAATGCTGGTCTACAAAGGTGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTGAGACCCGATATAAAGAGAGGAAGATTCTCcttagaagaagaagatatCATCATTCAGTTGCACAGCATCttgggaaacaaATGGTCAGCTATAGCAGCTAGGTTGCCAGGAAGAACCGACAATGAAATAAAGAACTATTGGAACACCCACATTAGGAAGAGGCTGCTTCGAATGGGAATTGACCCAGTTACACACGCCCCACGCCTTGACCTAGTTGACACGTCCTCTATTCTAAGGTCAGTTCTGTTGGGGAACCCCTCCCTTTTGAACATGCAAGGCTTATTAGGTGCCCAAGTTTTGATGAACCCGGAGTTGTTAAATCTGGCTGCCACTGCCTCTCTTCTATCGATCAAGAATAATGAGAACCCAAATTTGGCTTCACAGAATTATGTACAACAAAGCCAAGTTACCCCACCACTAGACTTAACTCAGTTTCAAATGCCTATGGAAGGCTTCTCGGGAACCATGGCAAACTTGAGCTGTTCAAGTTCTTCCCCACTGAGTTCAACTCCTTCGGGTGAGAACCATGTTTTGCAACAAAACCAAGTTGATTTGTTAGGGAACCCTGCCTTGGTGCAATCCCTGAACAATGCAAACCAAAACATGGGGTATGACTCGGTTCTGCCTACGCCTGTGTCAAGCCCAAACCAGTTGAATTCATCATCCACGTATGTGAGAAGTGGCACGGAGGAAGAGAGGGATAGCTTTTGCAGTGACTTGTTCGAGTTCGAAATTCCAGAGGGTTTGGACATTGCTGACATTTTTTGTAATGTCCCACaaactaattaa 972 0.4434 MGRVPCCDKNELKKGPWTPEEDLKLTNYIQIHGPGNWRSLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSLEEEDIIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLVDTSSILRSVLLGNPSLLNMQGLLGAQVLMNPELLNLAATASLLSIKNNENPNLASQNYVQQSQVTPPLDLTQFQMPMEGFSGTMANLSCSSSSPLSSTPSGENHVLQQNQVDLLGNPALVQSLNNANQNMGYDSVLPTPVSSPNQLNSSSTYVRSGTEEERDSFCSDLFEFEIPEGLDIADIFCNVPQTN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2187 323 CDD SANT 69 112 IPR001005 -
Ssu3g2187 323 PANTHER TRANSCRIPTION FACTOR MYB41 1 311 - -
Ssu3g2187 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 311 - -
Ssu3g2187 323 CDD SANT 16 61 IPR001005 -
Ssu3g2187 323 Gene3D - 13 66 - -
Ssu3g2187 323 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu3g2187 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu3g2187 323 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ssu3g2187 323 Gene3D - 69 116 - -
Ssu3g2187 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu3g2187 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu3g2187 323 SMART sant 13 63 IPR001005 -
Ssu3g2187 323 SMART sant 66 114 IPR001005 -
Ssu3g2187 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu3g2187 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2187 Ssu-Chr3 71045988 71047423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2187 1 312 MYB Transcription Factor Family AT4G21440 48.305 1.26e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g2187 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2187 K09422 - gmx:100817731 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2187 3 71045988 71047423 Ssu3g2187 3 71045988 71047423 ECH
Ssu8g0853 8 14439162 14440349 Ssu3g2187 3 71045988 71047423 PCT