Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2182 ATGCGTTGGTCTTCCTTCTATCACACAGCCTCGAGGGTTTTCCATGAGTATCCATCATGGTCCAAGTCTATTGTTGTATGCACTGTCATCAGTGGTGGAGGTCTAGTGGCATATTGCGATGCCAAACCAGAAAATGGTAATCAAAGCCCCAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCAGGAACCAGTTTTgcgaaaaatatgaaaaactcCTGCTATGATATTCATGTGGTTTCACCACGTAACTATTTTGCATTCACTCCATTGCTACCAAGTGTCACGTGTGGCACAGTGGAAGGAAGGAGCATTGTTGAACCGATTCGCAGTATCACCCACAAGAGGGGTGTAAATATTCAATTCAGTGAAGCTGAATGCTATAAGATCGATCACAAGAACAATAAAGTTTACTGCCGTGCTGGTAAAGACAAAAAGTTGGGTGGGATAGAAGAATTTTCCATTGATTATGATTACCTGGTAATAGCTATGGGAGGCCGTTCTAATACCTTCAACACACCTGGTGTTCAGGAGCATGCCCATTTCTTGAAGGAAGTGGATGAAGCTCTAAGAATCCGTCAGACAGTGATTGACCTTTTTGAAAGAGCTAGCCTCCCTTCTTTACCagtggaagagaagaaaaaacttCTGAGTTTTGTAGTTGTTGGTGGCGGTCCAACTGGGGTAGAGTTTGCTGCTGAGCTTCATGACTTTGTACATGCGGATATAGCTAAGTTATATCCTTCCCTTAAAGACTATGTGAAGATTACTCTCCTGGAGGCAGGAGATCATATCTTAaacatGTTTGACAAGAGAATTACAGAATTTGCTGAACAAAAGTTCGCCAGGGATGGCATTGATGTGAAGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAACGAAATCACTGCCAAAGAAAGGGTAACTGGTCAAGTTGTTTCTATACCTCACGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAATAGTTGAATTTATGAAGCAGCTTGGCCAGATTAACAGACGTGCATTGGTCACTGATGAATGGCTAAGGGTGGAAGGATGTGACAACATCTATGCTCTAGGTGATTGTGCCACTATAAATCAACGTAAAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACAAGAACAATTCTGGAAAGTTAGATCTTAAAGAATTTAAAGAAGTAGTTGGAGACATTATCGAGAGGTACCCACAAgtggatatttatttaaagaagaaCCAAATGAGGGACATGGCCAGCTTGCTACAGAAACCTAAAGAAAGCGCTATTGTAGTGGACATTGAATACTTTAAAGAAGCTCTTTCCAAAGTAGACTCTCAGATGAAAAACCTTCCTGCAACAGCTCAGGTAGCTGCACAACAAGGAGCCTATCTTGCAGACTGTTTCAACCGCATGGAGTTGTGTGAGAAGTATCCTGAAGGCCCTCTCAGGTTCAGGGGAGTTGGACGCCATCGGTTTCGTCCCTTCAGGTACAAGCATTTGGGACAATTTGCTCCTCTAGGAGGAGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTCTGGTATTCGGTGTATACAAGCAAACAAGTCAGCTGGAGGACAAGGGCTTTGGTGGTTGGTGACTGGGGAAGGCGATTCGTGTTTGGCAGGGACTCAAGTCGAATCTAA 1719 0.4252 MRWSSFYHTASRVFHEYPSWSKSIVVCTVISGGGLVAYCDAKPENGNQSPKKKVVVLGTGWAGTSFAKNMKNSCYDIHVVSPRNYFAFTPLLPSVTCGTVEGRSIVEPIRSITHKRGVNIQFSEAECYKIDHKNNKVYCRAGKDKKLGGIEEFSIDYDYLVIAMGGRSNTFNTPGVQEHAHFLKEVDEALRIRQTVIDLFERASLPSLPVEEKKKLLSFVVVGGGPTGVEFAAELHDFVHADIAKLYPSLKDYVKITLLEAGDHILNMFDKRITEFAEQKFARDGIDVKLGSMVVKVGENEITAKERVTGQVVSIPHGMVVWSTGIGARPEIVEFMKQLGQINRRALVTDEWLRVEGCDNIYALGDCATINQRKVMEDIAVIFSKADKNNSGKLDLKEFKEVVGDIIERYPQVDIYLKKNQMRDMASLLQKPKESAIVVDIEYFKEALSKVDSQMKNLPATAQVAAQQGAYLADCFNRMELCEKYPEGPLRFRGVGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWISIGQSTQWLWYSVYTSKQVSWRTRALVVGDWGRRFVFGRDSSRI 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2182 572 PANTHER NADH DEHYDROGENASE 70 572 IPR045024 GO:0003954|GO:0006116
Ssu3g2182 572 SUPERFAMILY EF-hand 368 458 IPR011992 -
Ssu3g2182 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 54 73 - -
Ssu3g2182 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Ssu3g2182 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Ssu3g2182 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 346 368 - -
Ssu3g2182 572 Gene3D - 43 447 - -
Ssu3g2182 572 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Ssu3g2182 572 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Ssu3g2182 572 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 376 IPR023753 GO:0016491
Ssu3g2182 572 SUPERFAMILY FAD/NAD(P)-binding domain 51 270 IPR036188 -
Ssu3g2182 572 SUPERFAMILY FAD/NAD(P)-binding domain 211 371 IPR036188 -
Ssu3g2182 572 PANTHER NAD(P)H DEHYDROGENASE B2 70 572 - -
Ssu3g2182 572 SMART efh_1 378 406 IPR002048 GO:0005509
Ssu3g2182 572 Gene3D - 448 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2182 Ssu-Chr3 70892698 70900327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2182 1 572 Chloroplast and Mitochondria Gene Families AT4G21490 67.698 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2182 K03885 - gmx:100820044 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2182 3 70892698 70900327 Ssu3g2182 3 70892698 70900327 ECH