Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2181 ATGACCATTGGTTCCTTCTTCATCAGGGCCTCCAGGGTTCTCAACTCCTCCAACCTCCTGCTTCTCTGCACTCtcagTGGTGGCAGTGTGGTGGCATACTCAGAATCACAATCAGGAGCTGAGCGCCCTAGTATTGATGCTAATGATCCCTCCAAAAAGAAAGTGGTGGTTCTGGGAACAGGATGGGCTGCTACCAGTTTCCTTAAGGATCTGGATGCTTCATTATATGATGTTCAGGTTGTTTCACCTCGTAACTACTTTGCATTTACTCCCTTATTACCCAGTGTCACTTGTGGGACAGTTGAAGCACGGAGCATTGTAGAGCCAGTCCGAAACATCATTAAAAAGagaaaaggagaaataaaCTTTTGGGAGGCAGAATGTGTCAAGATTGATTCTTCAAACAAAAAGGTTTTTTGTCGGTCCAATATTGACAACTTGGTGGGAAGTGGTGAATTTTCCTTGGACTATGACTTCTTGGTTGTAGCAGTAGGAGCACAAGTAAATACTTTTAACACCCCTGGTGTCAAGGAGAACTGTCATTTTCTTAAGGATGTTGAGGATGCTCAGAGGATTAGACTGTCTGTGATTGATTGCTTTGAGAAGGCTGTTCTTCCTAGTCTATCTGATGAAGAGCGAAGGTCAAATCTTCATTTTGTAGTTGTTGGAGGAGGTCCAACTGGTGTGGAATTTGCTGCAGAGCTGCATGATTATGTCCAAGAAgatttagtcaaattatatccAACTGTTAATGACAAAGTGAAAATAACATTGATTCAATCAGGAGATCACATCTTGAACATGTTTGATGATAGAATAAGTTCATTTGCTGAGCAAAAGTTTATGAGAGATGGAATAGAAGTTCAAACAGGATGCCGAGTTGTCAGTGTTAATGACAAGAATATTACAATGAAGGTGAAATCAACGGGAGAGGTTTGCTCGGTGCCGCATGGGTTGGTTGTCTGGTCAACTGGCATTGCAACTCTTCCAGTTATAAAAGACTTTATGGAAGAAATTGGTCAGGCTAAAAGGCATGTACTAGCAACTAATGAATGGTTGCGTGTGAAGGGATGTGAAGATGTGTATGCCATTGGTGATTGTTCTAGCATAACTCAACGTAAAATCGTGGATGATATCACAGCCATATTTGAGGCTGCAGACAAAAACAAGTCAGGCACCTTAACTATTGAAGAATTCCAGGAGGTGATGGATGACATTGTCTTAAGATATCCACAAGTTGAACACTATCTAAAGCAGAAACATCTGCGTGATTTTACCACTCTCTGGAAAGACTTACAGGGGAATGAAAGCAAGGAAATAGACGTAGAAGCGTTTAAGCAGGCCCTTTCTCATGCAGATTCACAGGTGAAGAGTCTGCCCGCAACGGCACAGGTTGCTGCCCAACAAGGTGCATATCTAGCTAGATGCTTTAACCGCAAGGATCATGCTGAAGAGCATCCTGAAGGTCCTCGGCGATTTAGCGGATCAGGACGTCATAGGTTTCTTCCCTTCCGGTATAGGCATTTGGGACAATTTGCTCCACTGGGTGGGGAGCAGGCAGCTGCAGAACTTCCTGGAGACTGGGTTTCCATGGGTCACAGTACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACAAGGGTCTTGGTCGTGTCTGATTGGACAAGAAGATTCATATTTGGCAGGGATTCAAGTCGTGTTTAA 1722 0.428 MTIGSFFIRASRVLNSSNLLLLCTLSGGSVVAYSESQSGAERPSIDANDPSKKKVVVLGTGWAATSFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEINFWEAECVKIDSSNKKVFCRSNIDNLVGSGEFSLDYDFLVVAVGAQVNTFNTPGVKENCHFLKDVEDAQRIRLSVIDCFEKAVLPSLSDEERRSNLHFVVVGGGPTGVEFAAELHDYVQEDLVKLYPTVNDKVKITLIQSGDHILNMFDDRISSFAEQKFMRDGIEVQTGCRVVSVNDKNITMKVKSTGEVCSVPHGLVVWSTGIATLPVIKDFMEEIGQAKRHVLATNEWLRVKGCEDVYAIGDCSSITQRKIVDDITAIFEAADKNKSGTLTIEEFQEVMDDIVLRYPQVEHYLKQKHLRDFTTLWKDLQGNESKEIDVEAFKQALSHADSQVKSLPATAQVAAQQGAYLARCFNRKDHAEEHPEGPRRFSGSGRHRFLPFRYRHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRDSSRV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2181 573 SMART efh_1 424 452 IPR002048 GO:0005509
Ssu3g2181 573 SMART efh_1 378 406 IPR002048 GO:0005509
Ssu3g2181 573 Gene3D - 42 428 - -
Ssu3g2181 573 Gene3D - 429 573 - -
Ssu3g2181 573 SUPERFAMILY FAD/NAD(P)-binding domain 218 373 IPR036188 -
Ssu3g2181 573 PANTHER NADH DEHYDROGENASE 48 573 IPR045024 GO:0003954|GO:0006116
Ssu3g2181 573 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Ssu3g2181 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 371 IPR023753 GO:0016491
Ssu3g2181 573 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Ssu3g2181 573 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Ssu3g2181 573 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 48 573 - -
Ssu3g2181 573 SUPERFAMILY EF-hand 338 457 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2181 Ssu-Chr3 70884467 70891214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2181 5 573 Chloroplast and Mitochondria Gene Families AT4G21490 64.014 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2181 K03885 - gmx:100793566 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2181 3 70884467 70891214 Ssu3g2181 3 70884467 70891214 ECH