Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2173 ATGGCGAACgcgttagagagagaaagtgggTTGACGATGTTCAGCGAGGAGGAGCTGAGGGAGGTGAGTGGGGTGAAGCGTGTTGGGGACTATGTTGAAGTCACGTGCGGGTGCACGAGCCATAGATACGGTGACGCTGTGGGAAGACTTAGGGTTTTCATTAGTGGGTACCTTGAAATCACTTGTGAATGCACCCCTGGTTGTCAGGAAGACAAGTTGACTCCTTCTGCATTTGAGAAACACTCTGGAAGAGAGACAGCCAGGAAATGGAAGAATAATGTCTGGGTAATAGTTAATGGTGAGAAAGTTCCATTGTGTAAAACAGTGCTGCTCAAATACTACAATCAAGTGTCAAAAGCTGCAAATGGATCCCATAGAACCCAAAATGGCCGGGCTTGTCACCGTGATGAGTTTGTTCGCTGCACTAGGTGCAATAAAGAGCGTAGGTTTCGTCTGAGGACTAAAGAGGAATGCCGCATTCACCATGATGCTTTGGCAGATGCGAATTGGAAATGTTCTGATCTTCCATATGACAAAATTACgtgtgatgatgaagaagaaagagCAAGTCGTAGAGTTTACAGGGGATGCACTCGTTCTCCAACATGCAAAGGTTGCACTTCTTGTGTGTGCTTTGGGTGTGATATCTGCCGCTTTTCAGATTGCAGCTGCCAGACTTGTGCTGACTTTACAAACAATGCCAAAGCTTGA 711 0.436 MANALERESGLTMFSEEELREVSGVKRVGDYVEVTCGCTSHRYGDAVGRLRVFISGYLEITCECTPGCQEDKLTPSAFEKHSGRETARKWKNNVWVIVNGEKVPLCKTVLLKYYNQVSKAANGSHRTQNGRACHRDEFVRCTRCNKERRFRLRTKEECRIHHDALADANWKCSDLPYDKITCDDEEERASRRVYRGCTRSPTCKGCTSCVCFGCDICRFSDCSCQTCADFTNNAKA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2173 236 ProSiteProfiles SAND domain profile. 17 105 IPR000770 GO:0003677
Ssu3g2173 236 PANTHER PROTEIN ULTRAPETALA 1 1 235 - -
Ssu3g2173 236 PANTHER PROTEIN ULTRAPETALA 1 1 235 IPR020533 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2173 Ssu-Chr3 70768562 70773156 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF ULT Ssu3g2173 SAND 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2173 - - gmx:100796203 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2173 3 70768562 70773156 Ssu3g2173 3 70768562 70773156 ECH