Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2170 ATGGGTCAAAAGAGAACTGCTTTGGAGTACGAGAGAGTGGAGATCTGTGGACAAGTTCTATTGGGATTTTTGTTGATCTGCACAATTCAGATTTCAAGTGCAGTCACTGATCCCACTGATGTTGCTGCAATTAATAGCTTATATATCGCACTGGGATCCCCTGTTCTCCCTGGGTGGGTTCCTAGTGGAGGAGATCCATGTGGAGAAGGATGGCAAGGCATTCAGTGTAATGGATCATTCATACAAAAATGTATAGTTCTAAATGGTGCAAATTTGGGAGGAGAACTGGGTGATAAACTGTCAACTTTCGTTTCAATTTCTGTAATTGATCTAAGCAACAACAACATTGGAGGAAATATTCCATCCAATTTGCCAGTTTCCATGAAAAACTTTTTTCTTTCAGCCAACCAGTTCACTGGAAGTATTCCGACCTCTTTATCCACTTTGACTGGACTGACAGACATGTCTcttaacaacaattttttaactggAGAAATACCAGATGCTTTTCAGTCACTTACGCTATTGATCAATCTAGATGTATCTCATAATAATTTGAGCGGAGAATTGCCTCCTTCTATGGATAACTTGTCGTCTCTGACCACCCTACGCTTACAGAACAATCAACTGTCTGGGACACTTGACGTTTTACAAGACCTTCCTCTAAAAGATTTGAATGTTGAGAACAACCAGTTTGCTGGCCCAATACCTCCAAAGTTGCTGAGTATCCCTAACTTCAGACAAGCTGGAAACCCATTTAATGTTAATGGTACTACAACTCCCGCTTCGTCACCTCGCTCCCCAGCAATAGCACCACCAGGAACTCCAGCCTCTGGGACATCATCTACTGGCCGTGTACCTACTAAACAGGCTGATGGACCAACTACAGCAAATGAATCACATTCTGGGAAATCcaaaaaaaacaccaaaaggGTGGTTTGGATATCTATTGCTAGTGTGTTGGGATTCATTTTGTTACTAGGACTCATTCTCTTTATTCCAAGATGTAGCAGAAGAGAACGGGTTGACAGAAGGTCGAAGCGACCTCAAATTGGTGCATATGGGGTTGAAAGACAAAATGTCAGGGATTATGGGGCTTTAGTCCAACGCCCGCCTAGTCAAATGGAAAAAGTGGGGGATCTTCCAAGGCCAAAAGAGAGTCATCAAGCGGAGACCAGGAGAGTTGTGGTTAATCCAAATCCACAGGGGGAGCAAGAGAAGGATGTGCAAAGAATGGCAACAATACCAAAGTCAGGAGATCATGGGATAGATATGAGCACACTAGAAGTATATTCAAtgcctcctcctcctcctccccccccccctccccctcccccGCCTCCACCCCCACCTCctcctactactactactgaTAAGGTGATTGTTGAGCCAGCCACATTCCACAGAGGGACTAATGTCAATCCACCCATAAGAAGTTCAGTTCCTCGTCCaacttttgcaaaatttttcaCCATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGCTGGGTAGTGTGTATAGAGCTGAGCTTCCTAACGGCAAGTTACTTGCTGTAAAGAAACTGGACAAGAGAGCCTCTGATCACCAGAAGGATGATGAATTTCTTGAATTGGTAAATAGTATTGACAGCATACGGCATGCAAATGTTGTTGAGCTTGTTGGATACTGTTCAGAACATGGTCAAAGGCTTCTGATCTATGAGTACTGCAGTAATGGGTCACTGTATGATGCACTCCACTTGGATGATGACTTCAAAACAAGACTCTCATGGAATGATTGTATTCGGATAGCACTTGGGGCAGCTAGAGCCTTAGAATATCTGCACGAGCTATGTCAGCCACCTGTAGTACATAGAAATTTGAAGTCTGCCAATATTCTCCTTGATGATGATCTATCCGTGCAAGTCTCTGATTGTGGTTTAGCTCCATTAATAGCTTCAGGATCTGTCACTCTCCGGAACCTGCTATCTGCTTATGGCTATGGAGCTCCTGAATTTGAGTCTGGAATTTACACACACCAAAGTGATGTGTACAGCTTTGGAGTGATTATGTTAGAACTTTTGACTGGCCGTCAGTCACATGATAGGACACGTCCACGAGGGGAGCAATTTCTGGTCAGATGGGCAGTTCCCCAACTTCATGATATTGATGCATTATCAAGCATGGTTGATCCTTCTTTAAATGGAGATTACCCGGCAAAATCATTGTCAAATTTTGCAGACATTATTTCTAGATGCCTTCAGTCCGGGCCAGAATTTAGGCCAGCAATGTCCGAGGTTGTCCTATACTTACTAAATATGATAAGGAAGGAGTCTCAGCAAAgcgaatcaaatgaaaaatga 2373 0.4067 MGQKRTALEYERVEICGQVLLGFLLICTIQISSAVTDPTDVAAINSLYIALGSPVLPGWVPSGGDPCGEGWQGIQCNGSFIQKCIVLNGANLGGELGDKLSTFVSISVIDLSNNNIGGNIPSNLPVSMKNFFLSANQFTGSIPTSLSTLTGLTDMSLNNNFLTGEIPDAFQSLTLLINLDVSHNNLSGELPPSMDNLSSLTTLRLQNNQLSGTLDVLQDLPLKDLNVENNQFAGPIPPKLLSIPNFRQAGNPFNVNGTTTPASSPRSPAIAPPGTPASGTSSTGRVPTKQADGPTTANESHSGKSKKNTKRVVWISIASVLGFILLLGLILFIPRCSRRERVDRRSKRPQIGAYGVERQNVRDYGALVQRPPSQMEKVGDLPRPKESHQAETRRVVVNPNPQGEQEKDVQRMATIPKSGDHGIDMSTLEVYSMPPPPPPPPPPPPPPPPPPPPTTTTDKVIVEPATFHRGTNVNPPIRSSVPRPTFAKFFTIASLQQYTNSFSQENLIGGGMLGSVYRAELPNGKLLAVKKLDKRASDHQKDDEFLELVNSIDSIRHANVVELVGYCSEHGQRLLIYEYCSNGSLYDALHLDDDFKTRLSWNDCIRIALGAARALEYLHELCQPPVVHRNLKSANILLDDDLSVQVSDCGLAPLIASGSVTLRNLLSAYGYGAPEFESGIYTHQSDVYSFGVIMLELLTGRQSHDRTRPRGEQFLVRWAVPQLHDIDALSSMVDPSLNGDYPAKSLSNFADIISRCLQSGPEFRPAMSEVVLYLLNMIRKESQQSESNEK 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2170 790 ProSiteProfiles Protein kinase domain profile. 502 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2170 790 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 25 789 - -
Ssu3g2170 790 MobiDBLite consensus disorder prediction 274 302 - -
Ssu3g2170 790 Gene3D Ribonuclease Inhibitor 39 261 IPR032675 -
Ssu3g2170 790 Pfam Protein tyrosine and serine/threonine kinase 505 772 IPR001245 GO:0004672|GO:0006468
Ssu3g2170 790 SUPERFAMILY Protein kinase-like (PK-like) 479 774 IPR011009 -
Ssu3g2170 790 MobiDBLite consensus disorder prediction 431 457 - -
Ssu3g2170 790 MobiDBLite consensus disorder prediction 251 308 - -
Ssu3g2170 790 SUPERFAMILY L domain-like 64 245 - -
Ssu3g2170 790 Gene3D Phosphorylase Kinase; domain 1 475 579 - -
Ssu3g2170 790 PANTHER OS01G0253100 PROTEIN 25 789 IPR045271 GO:0004714|GO:0006468
Ssu3g2170 790 ProSiteProfiles Leucine-rich repeat profile. 199 221 IPR001611 GO:0005515
Ssu3g2170 790 MobiDBLite consensus disorder prediction 251 265 - -
Ssu3g2170 790 MobiDBLite consensus disorder prediction 393 407 - -
Ssu3g2170 790 MobiDBLite consensus disorder prediction 427 458 - -
Ssu3g2170 790 MobiDBLite consensus disorder prediction 374 409 - -
Ssu3g2170 790 Gene3D Transferase(Phosphotransferase) domain 1 580 790 - -
Ssu3g2170 790 SUPERFAMILY Formin homology 2 domain (FH2 domain) 443 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2170 Ssu-Chr3 70722966 70729292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2170 31 785 Strubbelig Receptor Gene Family AT4G03390 59.871 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Ssu3g2170 PK_Tyr_Ser-Thr 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2170 - - ahf:112737625 1117.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2170 3 70722966 70729292 Ssu3g2170 3 70722966 70729292 ECH
Ssu8g0877 8 14858896 14867015 Ssu3g2170 3 70722966 70729292 PCT