Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2165 ATGGGTTGTTGTGTCTCAACAAGCAGTAGGAGTACTTGTAGCAGCAAGAGCAATGGAGACATGGTCTCTCCATCTTGCTTAGAAATTGGATTCTGTGGCCAGAAGAGAACAAGGAGAACATTCTCTGATCATGTTATTTCCCTCCACCATTTACCATCCTTGCCTAGCAGAATTTTCACCAATGGAAAGAGCCGGGGTTCGTGCATATTTACACAGCAGGGCCGCAAGGGTATTAATCAGGATGCCATGATTGTGTGGGAAGATTTCATGTCTGAAGATATGATCTTTTGCGGTGTCTTTGATGGTCATGGTCCACATGGTCATCTTGTTGCGCGCAAGGTGAGGGATGCCTTGCCAATAAAACTGCTTTCATTTTTGCATTCATGTGAATCGAAGAGAAACGGGTCAGGTAAAACTTGCTTCAAAGGGAATGTAAAACCTGATAGTGGAGACTCCGAGCAGGATTGCTCTACGGAGGATAAACTGAACTCTACATGGAGAGAAGCTTTCATGAAGGCATACAAAGCTATGGACAAAGAACTCCGGTCTCATCCGAATCTGGATTGCTTCTGTAGTGGGAGCACTGCTGTGACTATAGTGAAGCAGGGTTCGAATCTGTTCATGGGCTATATTGGGGATTCCCGGGCGATCATGGGATCCAAGGATAGCAATGACTCCATGGTGGCTATTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGGGAAGCAGAAAGAATTAAGCGGTGCAAAGGTAGGGTGTTTGCTTTGCAAGATGAGCCTGAAGTGCCCAGGGTGTGGTTGCCTTTTGACGATGCGCCAGGATTAGCAATGGCTAGAGCATTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGGCTGCTTACGGACAGAGATCAGTTCATTGTTCTTGCCTCTGATGGGGTGTGGGATGTTCTAAGCAATGAGGAGGTGGTTGAGATAGTATCTTCAGCACCAACGCGATCATCAGCAGCAAGGATTCTGGTAGATTCTGCTGCCAGGGAGTGGAAACTCAAATACCCTACTTCAAAGATGGACGACTGTGCTGTAGTGTGCTTATTTTTGGATGGCAAAATGGACTCAGAATCTGATTATGAAGAACAAGGCTTTTCTTCTGCAACCATCCAGAGCAACCATTCGGGTAACCCCATTGAGTCAGATGATGGACAGAAGTCCGAGCCATCATTGCAAAGGAACTTCACTGTGAGATCCTCAGAAGAAAATGAGACTAATGGAGCAATATCTGTTGATGCTGAAGATGGAACATCATCAGCTGATGATCAAAACTGGTCAGGTTTGGAAGGGGTCACTCGGGTAAACTCACTAGTCCAACTTCCTAGATTTTCTGAGGAGAGGCCAAACTCTTGA 1413 0.4565 MGCCVSTSSRSTCSSKSNGDMVSPSCLEIGFCGQKRTRRTFSDHVISLHHLPSLPSRIFTNGKSRGSCIFTQQGRKGINQDAMIVWEDFMSEDMIFCGVFDGHGPHGHLVARKVRDALPIKLLSFLHSCESKRNGSGKTCFKGNVKPDSGDSEQDCSTEDKLNSTWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAIMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYEEQGFSSATIQSNHSGNPIESDDGQKSEPSLQRNFTVRSSEENETNGAISVDAEDGTSSADDQNWSGLEGVTRVNSLVQLPRFSEERPNS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2165 470 MobiDBLite consensus disorder prediction 380 449 - -
Ssu3g2165 470 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 458 - -
Ssu3g2165 470 MobiDBLite consensus disorder prediction 1 20 - -
Ssu3g2165 470 CDD PP2Cc 65 370 IPR001932 -
Ssu3g2165 470 PANTHER ALPHABET, ISOFORM E-RELATED 1 458 - -
Ssu3g2165 470 MobiDBLite consensus disorder prediction 381 449 - -
Ssu3g2165 470 SUPERFAMILY PP2C-like 58 372 IPR036457 -
Ssu3g2165 470 Gene3D - 58 378 IPR036457 -
Ssu3g2165 470 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Ssu3g2165 470 Pfam Protein phosphatase 2C 154 347 IPR001932 -
Ssu3g2165 470 SMART PP2C_4 50 368 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2165 Ssu-Chr3 70617873 70620758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2165 1 470 PP2C-type Phosphatase Gene Family AT1G03590 69.602 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2165 - - gmx:100813306 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2165 3 70617873 70620758 Ssu3g2165 3 70617873 70620758 ECH
Ssu8g0884 8 15003633 15006359 Ssu3g2165 3 70617873 70620758 PCT