Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2161 ATGGAGACTGTTCTTTCCAATCACTCCCCACCTTTGGACTTCAAGGGTTTGAGCAAGGAGGAGGAAGACTCATTGCTAGGGCAAGTTGAAATATGGTGGTACATGACATGCTTCACCGACTCTGTGGCCTTAAAATGTGTTATAGAGCTGCGCATAGCAGACATAATAGACCGCTATGGCAAACCACTGTCCTTGTCCCAAATTGTGGAGAACATTGAAGATGCACCCTCCCCAGATGCCTCTCTACTGCAGAGAGTCATGAGGGTGATGGTGCGCAGAAAGATCTTCAGTGCAGAACAATCAGAAGCCGGAGAAACCCTATATGGCTTGACACGTGCTTCGAAATGGATCCTACGTGACACAAAAATGACCTTGGCACCCATGTTGCTGCTAGAGAACCACCCAATTCATCTGAACCCTGCTCACTACATCAGTGAGATTATAAGAGAGGGCACAAAAAATGGCACTGCCTTCTTTAGGTGCCATGGCCATGAGCAATTTGAGATGACGGGTTTGGACCCTGAATACAACAGGTTGTTCAATGAGGGCATGGTGTGCACGGCCAGGGTTGTGTCCAAGGCTGTGATCACTGGGTACAAAGATGGGTTTAACCAGATTAAGTCCTTGGTTGATGTGGGAGGTGGCATTGGAGGGTCTCTTTCTGAGATTGTTAGAGCCTACCCGCACATCAAAGCCATCAACTTTGACTTGCCCCATGTGGTTGCCACAGCGCCTAAGTATGATGGAATCACCCATGTTGGAGGTGACATGTTCGTGTCCATTCCTAGTGCTGATGCTATTTACATGAagTGGATTCTGCATGACTGGAGCGATGAGCACTGCATCAAGATCTTGAAGAACTGCAGGAAGGCAATACCAGAGAAGACAGGAAAGGTGATCATCGTGGATCACGTGCTGCGGCCCGAAGGCAACGAACTCTTCACCGACGTTGGCATTGCATTTGACATGATGCTTCTCGCGCACAACGCTGGTGGCAAAGAGAGGACCGAGGAGAACTGGAAGTGGCTATTTAAAGAAACAGGTTTCGCCCGTTACAACATCATCAAGATCAACTCTCTCCCATCCATCATTGAGGCATTTCCAATATGA 1110 0.482 METVLSNHSPPLDFKGLSKEEEDSLLGQVEIWWYMTCFTDSVALKCVIELRIADIIDRYGKPLSLSQIVENIEDAPSPDASLLQRVMRVMVRRKIFSAEQSEAGETLYGLTRASKWILRDTKMTLAPMLLLENHPIHLNPAHYISEIIREGTKNGTAFFRCHGHEQFEMTGLDPEYNRLFNEGMVCTARVVSKAVITGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHIKAINFDLPHVVATAPKYDGITHVGGDMFVSIPSADAIYMKWILHDWSDEHCIKILKNCRKAIPEKTGKVIIVDHVLRPEGNELFTDVGIAFDMMLLAHNAGGKERTEENWKWLFKETGFARYNIIKINSLPSIIEAFPI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2161 369 Pfam O-methyltransferase domain 143 350 IPR001077 GO:0008171
Ssu3g2161 369 Gene3D - 15 117 IPR036388 -
Ssu3g2161 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 366 IPR029063 -
Ssu3g2161 369 Pfam Dimerisation domain 43 91 IPR012967 GO:0046983
Ssu3g2161 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 368 IPR016461 GO:0008168
Ssu3g2161 369 SUPERFAMILY "Winged helix" DNA-binding domain 24 120 IPR036390 -
Ssu3g2161 369 PANTHER O-METHYLTRANSFERASE 20 368 IPR016461 GO:0008168
Ssu3g2161 369 Gene3D Vaccinia Virus protein VP39 119 369 IPR029063 -
Ssu3g2161 369 PIRSF O-mtase 13 369 IPR016461 GO:0008168
Ssu3g2161 369 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 20 368 - -
Ssu3g2161 369 CDD AdoMet_MTases 209 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2161 Ssu-Chr3 70451288 70458781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2161 42 355 Monolignol Biosynthesis Gene Families AT5G54160 38.941 4.55e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2161 K22588 - gmx:100812768 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2161 3 70451288 70458781 Ssu3g2161 3 70451288 70458781 ECH