LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g2156	ATGGCAAATAACAGTGGAAAGTCCATCAAGGAGGGTGTTGATGAGACTCATCACAAGGTGATTGGTGAAAGTGAAGGCCAAGATTGGGAGAAAGAGAAGGGAAAGGGTCTGGATTTGAGCTCAGGGAGGAGGCAATGGAAGCCAGTTTTTGATGATGCTTCCGTGTCACATAGACCTCTCAAGAAGATTCGTAGCCCCGAACGCGAAAACCCAAATCAACAACAACCACCATCCTCTGTGCTATCTCTTCAACCTCCCTCATCAAGAATAGTGTTTCCTTTCGCTTTTGAAGGCTCTCAACATCCAATGCCATTCCCACACCCTTTTGGAACCACAAATTTACCTCTTTTTCGTCCACCTCTGCAGCCAACACAACAAATGATATCTTTTGGGCCCCAACAGAACATGGGGTATCCACCATTCCTAGCCCCAGATTCCACTTTGCCACACCAACAACTCCAGCATCATCAGCACCACCAGCAACAACTTCTTCAGTATTGGAGCGATGCATTGAATCTAAGTCCGAGAGggaggatgatgatgatgatgaacaGGTCAGGGCATGAAGGGAGACCAATGTTAAGGCCACAGCCACAGGCACAGCCTTTGAATGCCACTAAGCTCTATAGGGGAGTGAGGCAACGCCACTGGGGCAAATGGGTCGCTGAGATTCGTCTCCCTCGCAATAGGACTCGTCTCTGGCTTGGAACCTTTGACACTGCCGAAGATGCTGCTATGGCTTACGATCGCGAGGCCTTTAAGCTTAGAGGAGAGAATGCTAAGCTCAATTTCCCTGAACTCTTTCTCAACAAAGAAAAAGCAGAATCATCATCCACAACAGCTCCTGCCTCTGCTgctgcttcttcttctcctcacGAAGGTTCAACATCAACGTCAAGCCAGAACACAAAGCAGCAACCTGAGCCAATTCCTGAAGAGACGAACACTGAGAGTGAGGGCATGCCACCAACGGAGACATTAGCGGAAGAGAATGCTGAAACTGGGGAAGGAAGTTCACAGCCTCAGGAACTGGTTTGGGGAGAGTGGTTCAATGCAATTCCTGCAGGTTGGGGTCCTGGGAGTCCTGTGTGGGATGACTTGGACCCCAACAATAATCTTCTTTTGCATTCTCAGCTTCCCTTTGTGAATCCAAATCAGCAAGAGTTCCATGATGCTGGTGCTTCTCAGACACAACAAGAAGATCACAACACAGGACCAGGTTCTTCCTCTCCCTCTTGTCCCATGAGGCCTTTCTTCTGA	1260	0.4706	MANNSGKSIKEGVDETHHKVIGESEGQDWEKEKGKGLDLSSGRRQWKPVFDDASVSHRPLKKIRSPERENPNQQQPPSSVLSLQPPSSRIVFPFAFEGSQHPMPFPHPFGTTNLPLFRPPLQPTQQMISFGPQQNMGYPPFLAPDSTLPHQQLQHHQHHQQQLLQYWSDALNLSPRGRMMMMMNRSGHEGRPMLRPQPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKEKAESSSTTAPASAAASSSPHEGSTSTSSQNTKQQPEPIPEETNTESEGMPPTETLAEENAETGEGSSQPQELVWGEWFNAIPAGWGPGSPVWDDLDPNNNLLLHSQLPFVNPNQQEFHDAGASQTQQEDHNTGPGSSSPSCPMRPFF	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g2156	419	Pfam	AP2 domain	209	257	IPR001471	GO:0003700\|GO:0006355
	Ssu3g2156	419	MobiDBLite	consensus disorder prediction	378	411	-	-
	Ssu3g2156	419	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	1	419	-	-
	Ssu3g2156	419	CDD	AP2	207	267	IPR001471	GO:0003700\|GO:0006355
	Ssu3g2156	419	MobiDBLite	consensus disorder prediction	50	68	-	-
	Ssu3g2156	419	PRINTS	Ethylene responsive element binding protein signature	231	247	IPR001471	GO:0003700\|GO:0006355
	Ssu3g2156	419	PRINTS	Ethylene responsive element binding protein signature	209	220	IPR001471	GO:0003700\|GO:0006355
	Ssu3g2156	419	MobiDBLite	consensus disorder prediction	273	323	-	-
	Ssu3g2156	419	MobiDBLite	consensus disorder prediction	10	40	-	-
	Ssu3g2156	419	MobiDBLite	consensus disorder prediction	378	419	-	-
	Ssu3g2156	419	SMART	rav1_2	208	271	IPR001471	GO:0003700\|GO:0006355
	Ssu3g2156	419	ProSiteProfiles	AP2/ERF domain profile.	208	265	IPR001471	GO:0003700\|GO:0006355
	Ssu3g2156	419	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053	1	419	-	-
	Ssu3g2156	419	MobiDBLite	consensus disorder prediction	273	322	-	-
	Ssu3g2156	419	MobiDBLite	consensus disorder prediction	1	85	-	-
	Ssu3g2156	419	MobiDBLite	consensus disorder prediction	69	85	-	-
	Ssu3g2156	419	Gene3D	AP2/ERF domain	208	266	IPR036955	GO:0003700\|GO:0006355
	Ssu3g2156	419	SUPERFAMILY	DNA-binding domain	208	266	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g2156	Ssu-Chr3	70337418	70338677	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g2156	33	368	AP2-EREBP Transcription Factor Family	AT4G28140	41.471	4.35e-64	206

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Ssu3g2156		AP2	2.7e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g2156	-		-	gmx:100811328	668.307