Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2154 ATGAAGTTTCTCTTTGAAAAGCTTCTTTCTGAATTGCCTCTAGTCATTCTTTGGTCTTTTGCCACAATTATCATCTCTCAACATCTTAATGCTGTGAGTCTACCAAACAATGAAACTGTCCCAGCAGTGATTGTGTTTGGGGACTCTATAGTGGATACGGGCAACAACAACTACATCAGCTCCATAGCCAAATGCAATTTCCTACCATATGGTAGAGATTTTGGTGGAGGAAATCAACCAACCGGAAGGTTCAGCAATGGTTTAGTCCCATCAGACATCATTGCTGCAAAATTTGGAGTCAAGAAGCTTTTGCCAGCTTATCTTGATCGAAAACTGCAACTTCAAGATCTCCTCACAGGCGTAAGCTTTGCATCCGGTGGTGCCGGTTATGATcctataacttttaaaatagcaTCAGTGCTATCATTATCAGATCAACTAGACAAGTTCAAGGAATACAAAAACAAGATAAAGGAAACAGTTGGAGAAAACAGAACGGcaacaataatatcaaaaagCATATACATCTTGTGCACAGGAAGTAATGACATCACCTATACTTACTCTCTATTTAGGCGAGCACAGTATGACATTCCAGCATACACGAACTTCATGGCATCACAAGCCACAAACTTCTTGCAGGAACTTTTTGGACTAGGAGCTAGAAGGATTGGAGTAGTTGGTTTGCCGGTTTTAGGGTGCGTGCCCTCACAGAGAACAATTCACGGAGGCATACACAGAGcatgttcaaattttgaaaaccagGCCGCAATGCTCTTCAACACCAAGCTCTCATCCCAAATGGATGTCCTTAAAAAAGAGTTTCCAGAGGCTAGACTTGTCTACCTTGATATTTACAACCCATTACTGAATATCATTCAAAACCCTGCTAAATATGGTTTTGAAGTAACAGACAAAGGATGCTGTGGCACAGGAAATATTGAAGTAGGCATATTGTGCAACCGTTTCAACCTACACATATGTTCAAACACCTCAAACTATGTATTCTGGGATAGTTTCCATCCTACGGAAGCGGCCTATAATGTGCTTTGTTCTCTGGTGCTTGATAACAAAATCAAGGACTTCTTCTGA 1092 0.3919 MKFLFEKLLSELPLVILWSFATIIISQHLNAVSLPNNETVPAVIVFGDSIVDTGNNNYISSIAKCNFLPYGRDFGGGNQPTGRFSNGLVPSDIIAAKFGVKKLLPAYLDRKLQLQDLLTGVSFASGGAGYDPITFKIASVLSLSDQLDKFKEYKNKIKETVGENRTATIISKSIYILCTGSNDITYTYSLFRRAQYDIPAYTNFMASQATNFLQELFGLGARRIGVVGLPVLGCVPSQRTIHGGIHRACSNFENQAAMLFNTKLSSQMDVLKKEFPEARLVYLDIYNPLLNIIQNPAKYGFEVTDKGCCGTGNIEVGILCNRFNLHICSNTSNYVFWDSFHPTEAAYNVLCSLVLDNKIKDFF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2154 363 SUPERFAMILY SGNH hydrolase 42 356 - -
Ssu3g2154 363 PANTHER GDSL ESTERASE/LIPASE EXL3 2 362 - -
Ssu3g2154 363 CDD SGNH_plant_lipase_like 41 357 IPR035669 -
Ssu3g2154 363 Pfam GDSL-like Lipase/Acylhydrolase 43 350 IPR001087 GO:0016788
Ssu3g2154 363 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 43 54 IPR008265 GO:0006629|GO:0016298
Ssu3g2154 363 Gene3D SGNH hydrolase 28 358 IPR036514 -
Ssu3g2154 363 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 2 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2154 Ssu-Chr3 70248958 70250961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2154 37 358 Pollen Coat Proteome AT1G75910 41.566 4.40e-75 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2154 - - gmx:100809562 606.675