Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2142 atggcCTTAGATCACTTGGAGGAGACTGTGccccaaaaagaaaattggaaaTCTTCCAGCGAAATCATTGCAGATTCTGATAGAAATGCCTCTGGTGGCTTTGACTGCAACATCTGCCTGGAATGTGTGCAAGATCCAGTGGTAACACTTTGTGGTCATCTGTATTGCTGGCCCTGCATATACAAATGGCTTCATTTGCAAAGTACCTCATTGGAAAATGAAGAACAGAAGCTACAATGTCCAGTATGCAAATCGGAAGTTTCTCAATCCTCCCTAGTTCCATTATATGGCCGTGGCCAAACCACAATACCTTCTGAACGGAAGCCACACCAAGTAGGGACTGTCATACCACAAAGACCTCAGGGTCCCAGATCATTTAACACTACAAGTGTTTCACCAATTTCTCAAAGTTATCATCCCTATAATAATCCTTATCATCGCCAACAGTTCAACTCAATTCCAAGCGGTTATACCTCACCAATGCTTAGCACAAGTGGTTCACTAGACAACACATTTGGAATCTTTGGTGAGATGATATATGCAAGGGTCTTTGGTAACCAGGTGgcaaacatacatacatacaatcTTTCAGGGATCAGTAACCCAAGGATCAGAAGACATTTAATGCAAGTTGATAAATCACTCGGCAGAATAAGTTTTTTCCTCCTTTGCTGCCTAGTTTTGTGTCTTCTCTTATTTTGA 702 0.3917 MALDHLEETVPQKENWKSSSEIIADSDRNASGGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHLQSTSLENEEQKLQCPVCKSEVSQSSLVPLYGRGQTTIPSERKPHQVGTVIPQRPQGPRSFNTTSVSPISQSYHPYNNPYHRQQFNSIPSGYTSPMLSTSGSLDNTFGIFGEMIYARVFGNQVANIHTYNLSGISNPRIRRHLMQVDKSLGRISFFLLCCLVLCLLLF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2142 233 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Ssu3g2142 233 ProSiteProfiles Zinc finger RING-type profile. 36 84 IPR001841 -
Ssu3g2142 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ssu3g2142 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 11 233 - -
Ssu3g2142 233 Pfam RING-type zinc-finger 36 81 IPR027370 -
Ssu3g2142 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 113 IPR013083 -
Ssu3g2142 233 CDD RING-HC_AtRMA_like 34 85 - -
Ssu3g2142 233 SMART ring_2 36 83 IPR001841 -
Ssu3g2142 233 MobiDBLite consensus disorder prediction 103 129 - -
Ssu3g2142 233 SUPERFAMILY RING/U-box 33 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2142 Ssu-Chr3 70044266 70044967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2142 21 233 C3H Transcription Factor Family AT4G28270 38.767 6.94e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2142 K10666 - gmx:100807729 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2142 3 70044266 70044967 Ssu3g2142 3 70044266 70044967 ECH
Ssu3g2142 3 70044266 70044967 Ssu8g0902 8 15249976 15250746 PCT