Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2133 ATGGGTTGCGTATGTTCGAAGAGTTCAGCTGTAGAGGACAGCAGGGAAGGTGTCACAAAGAGATTGCAATCATATAGCACTAGGCCTTCAGAGTTGAATGTTTTGCGGTTGAGTTCGACCAAGAGGGTTCAGGAGGGTGGGGTGAAAGATGTGTTAATAGATGGTGGTCACGTGAAAGGTTCATTGATTGAGAAGAAGGCCAATGGTTCAGTGCAGTTTTATGGTGATCATGATAGggagaagaaaatagagaagcCTGAGTTGACTGTCGTGGATCATATTGGCCCTGGAAGGGTTCCAAAGGCTATAGAAGGAGAGCAAGTTGCGGCCGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCACGGAGTGCGAATACTTTCGAGAGGTTGCATAAAATTGGGCAAGGAACTTATAGTGCTGTTTATAAGGCACGGGATGTGATTAACCACAAGTTTGTTGCATTGAAGAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTCGACTTGACCATCCAAACATTATAAAATTGGAGGGCTTGATAACGTCACACATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGCAGCAAATCCTGACATCAAGTTCTCTGAGCCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATAATGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAGTCTTAAAGATTGCTGATTTTGGTTTGGCAAGTTTTTTTGACGCCCACCACAATGTTCCACTGACAAGCCGTGTAGTAACTTTATGGTATAGACCACCAGAACTTTTACTTGGAGCAAATCATTATGGGGTTGCAGTGGATTTGTGGAGCGCTGGTTGCATACTGGGGGAACTATATACTGGAAGGCCCATTTTGCCAGGAAAAACGGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCACCATCTGACAATTATTGGCTTAAATTGCGGTTGTCACAATCAACAGTATTCAGGCCGCCACACCATTATAGGCGATGTGTTGCTGACACATTTAAGGACTACCCATCTACTGCGGTAAAGCTTATAGAGACCCTACTTTCTGTAGAGCCAGCACATCGAGGGACTGCAGCAGCTGCTCTGAAAAGTGAGTTCTTTGCATCAGAGCCTCTGCCTTGTGATCCATCAAGTTTACCAAAATATGCTCCCAGCAAGGAGATTGATGCTAAATTACGGGATGAAGCCAGAAGGCAAGGAGCTGTTGGAGGTAGGGAGCAAAAAGTTGCATCAGGAGTTAGACAAGAAAAAGGACATAGGGCCAATGTCACAGCAAAAGACGATGCTTACCCAGGCTTATCAACACAGCAAGGACGTTATTCCAGCTCAAAGAACCGAAGTGAATTATCCAACCCTCATAAGGGACCGGTGTCTGGGATTCTGGGTTTCCCTCACAAACAGTCGGAAGATGTTAAAGAAATGGAAAGTAATTTCCCTGGGCATCACTATAAGAGGCCTTCACATTCAGGCCCATTGATTCCTGGTTCTGTCTGGGCAAAAGGTGGGAAGGAAGTTGATGATGCGACTCCTGTTTCAAACAGAGGGAACCTATCGAAACTATCTGGGCTTGTGGCATCTAGGACTTTGTTGTCTGAAGATCAGGAGGATAAACCAGTTCACTTGCACCACAAAAAACCGATTGAAGTAAGAAAATCTGTGGAGTCAACTAATGGATCAGAGTCAAGAAGGCAGGATCAAAAACGGATTGTTGATCTCCATCAAATTGAAAGTAGAAGGGTCCCAGCTGAAAGATCAACTCCGGGCGGGCACGAGTCCATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTTTCGTCAAGCAACATGGATCAGATGCTCAAAGAGCATGATCGAAAGATCCAAGAGTTTTCAAGACGAGCGAGAATTGACAAGTCAAGAGCAAGAGGTGAGAAAGTTCGTGCACAGCGGAAGTAG 2094 0.4451 MGCVCSKSSAVEDSREGVTKRLQSYSTRPSELNVLRLSSTKRVQEGGVKDVLIDGGHVKGSLIEKKANGSVQFYGDHDREKKIEKPELTVVDHIGPGRVPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSAVYKARDVINHKFVALKKVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLITSHMSRSLYLVFEYMEHDLTGLAANPDIKFSEPQLKCYMQQLLSGLDHCHSHNVLHRDIKGSNLLIDNNGVLKIADFGLASFFDAHHNVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSAGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDNYWLKLRLSQSTVFRPPHHYRRCVADTFKDYPSTAVKLIETLLSVEPAHRGTAAAALKSEFFASEPLPCDPSSLPKYAPSKEIDAKLRDEARRQGAVGGREQKVASGVRQEKGHRANVTAKDDAYPGLSTQQGRYSSSKNRSELSNPHKGPVSGILGFPHKQSEDVKEMESNFPGHHYKRPSHSGPLIPGSVWAKGGKEVDDATPVSNRGNLSKLSGLVASRTLLSEDQEDKPVHLHHKKPIEVRKSVESTNGSESRRQDQKRIVDLHQIESRRVPAERSTPGGHESMGNKIYLSGPLMVSSSNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVRAQRK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2133 697 PANTHER CELL DIVISION PROTEIN KINASE 1 684 - -
Ssu3g2133 697 MobiDBLite consensus disorder prediction 673 697 - -
Ssu3g2133 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Ssu3g2133 697 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Ssu3g2133 697 Gene3D Transferase(Phosphotransferase) domain 1 218 457 - -
Ssu3g2133 697 MobiDBLite consensus disorder prediction 462 476 - -
Ssu3g2133 697 PANTHER CYCLIN-DEPENDENT KINASE 1 684 - -
Ssu3g2133 697 MobiDBLite consensus disorder prediction 448 544 - -
Ssu3g2133 697 MobiDBLite consensus disorder prediction 518 534 - -
Ssu3g2133 697 MobiDBLite consensus disorder prediction 586 637 - -
Ssu3g2133 697 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
Ssu3g2133 697 MobiDBLite consensus disorder prediction 673 690 - -
Ssu3g2133 697 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Ssu3g2133 697 MobiDBLite consensus disorder prediction 481 504 - -
Ssu3g2133 697 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2133 697 CDD STKc_CDK9_like 135 419 - -
Ssu3g2133 697 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2133 697 MobiDBLite consensus disorder prediction 586 649 - -
Ssu3g2133 697 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2133 Ssu-Chr3 69816568 69821395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2133 127 461 Core Cell Cycle Gene Families AT5G10270 47.863 2.82e-110 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu3g2133 Pkinase 1.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2133 - - gmx:100807590 1261.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2133 3 69816568 69821395 Ssu3g2133 3 69816568 69821395 ECH