Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2132 ATGTCTACCCTTCTCATCTCTGTCCTTCTTCTCGTTACAAACCTCATCCTTCTAACCTCAGTTTCATCCACTGAGTTCATCTACAACACCAACTTCGACTCCACCAACACCCTTCTCTATGGCAACGCCACCATTGAATCTTCCATTCTCACCCTCACCAACCGTAACACATTCTCTGTGGGCCGTGCTTTCTACCCCTCCAAGATTCCCACAAAATCCTCCAACTCTTCAACCCCTTTACCGTTCTCAACCTCCTTCATTTTCTCCATTGCCCCATTCAAAGAACTTCTCCCTGGCCATGGTTTTGTCTTCATATTGTCACCTTTTGCAGGCACCACTGGGGTGAGTTCTTCTGAGCATCTTGGCCTCTTCAACTTCACCAACAATGGTAGTCCCAACAACCATGTCTTTGGCGTTGAGTTTGATGTGTTTGAAAACCAAGAGTTCAATGACATCAATGACAATCATGTGGGGGTGGACATAAACTCTCTTGATTCTTTTACTTCCCATGCAGCTGGATTTTGGGGTGGGAAGGATGGTGACAAGTTTGAGGATTTGAAGCTTAATGATGGTGAGAACTATCAAGTGTGGATTGACTATTTAGATTCTAGAGTTAATGTCACAATGGCTCTTGCAGGCCAAAAAAGGCCAAAGAAGCCTTTGATTAGTGAGCTTGTGGATCTTTCTGAAGTTCTTTTGGATGAAATGTATGTTGGATTTTGTGGGGCAACAGGGAAGCTTGTGGAGAGCCATAAGATTTTGGCTTGGAGCTTTAGTAACTCAAATTTTTCTATTGGTGATGCCTTAGGGACTACAAATTTGCCTTCATTTGTGCTTCCCAAAGAATCTGTTTTGAGGTCAAAAGGTTTAATTGTAGGGATCATTACAGGTGTTTTCTTTGTCATTGGTGGTGCTGTTGTTGTGATATTTGAGCTATTTCTCAGAAGAAAAAGGGGCAAAAGAAAGGAGGAAAAAGAAGACATTGAAGATTGGGAATTAGAGTATTGGCCACACCGTATTAGgtatgaagatatttatgctgCAACTAAAGGATTTTCAGACCGAAATGTAATTGGGTTTGGAGAGAATGGGAAAGTCTATAAAGGGCTTCTCCAAGGAGTGCAAGTTGCAGTGAAAAGAATTCCTTGTGACAGTGAATAtggaatgagagtgtttttgtCTGAGATTTCAAGTTTAGGCAGGTTGAAGCATAGGAATGTGGTTCCATTGAGAGGTTGGTGtaagaaagagagagggagattGATTTTAATCTATGACTATATGGATAATGGAAGtttagataaaagaatatttgatgGTGATGACAACACAATTTTTGGGTGGGAGGAGAGAATCAAGGTGCTGAAGGATGTGGCACATGGAGTATTGTATTTGCATGAGGGATCGGAGGTTACGGTGTTGCACAGAGACATCAAGGCAAGCAATGTGTTACTTGATAAGGATATGAATGCAAGGTTGGGGGATTTTGGACTAGCCACAATGTATCATCATGAGCATGTTGCTGATAACTCAAGAGTGATTGGAACTGTTGGTTTCATGGCACATGAACTTATTCATACTGGGAGAGCCTCAACTCAGACTGATGTGTTCAGTTTTGGTGTGTTGGTTTTAGAGGTGGTGTGTGGGAGAAGACCAAATGAAGAAAACAAGCCAGCCTTGGTTACTTGGTTATGGAAGCTAATGGAGAGAGGAGAAGAGTGTTCTGCTCTTGATGAAAGATTAAAAGGGAGGGGTGAATGTAGCATCGATGAGTTTAAGAGGGTTCTTCATCTTGGTTTGTTGTGCACTCATCTTGACCCTCATGTTAGGCCAACTATGAGACAGGTTGTAAAGGTGCTGGAGGGAGAGAGTTTAGATATGAGCTTGCTTGACAAAATAAATTCAGCAGCTGGATATGATGGAAGCTTTGGTAACAGCATTCACCCCACAATTGATGAAATGTTCTCATCTCACTGCTCTTTCACAACTCTATGTGGCAGTGAGGGCAGATGA 2013 0.4078 MSTLLISVLLLVTNLILLTSVSSTEFIYNTNFDSTNTLLYGNATIESSILTLTNRNTFSVGRAFYPSKIPTKSSNSSTPLPFSTSFIFSIAPFKELLPGHGFVFILSPFAGTTGVSSSEHLGLFNFTNNGSPNNHVFGVEFDVFENQEFNDINDNHVGVDINSLDSFTSHAAGFWGGKDGDKFEDLKLNDGENYQVWIDYLDSRVNVTMALAGQKRPKKPLISELVDLSEVLLDEMYVGFCGATGKLVESHKILAWSFSNSNFSIGDALGTTNLPSFVLPKESVLRSKGLIVGIITGVFFVIGGAVVVIFELFLRRKRGKRKEEKEDIEDWELEYWPHRIRYEDIYAATKGFSDRNVIGFGENGKVYKGLLQGVQVAVKRIPCDSEYGMRVFLSEISSLGRLKHRNVVPLRGWCKKERGRLILIYDYMDNGSLDKRIFDGDDNTIFGWEERIKVLKDVAHGVLYLHEGSEVTVLHRDIKASNVLLDKDMNARLGDFGLATMYHHEHVADNSRVIGTVGFMAHELIHTGRASTQTDVFSFGVLVLEVVCGRRPNEENKPALVTWLWKLMERGEECSALDERLKGRGECSIDEFKRVLHLGLLCTHLDPHVRPTMRQVVKVLEGESLDMSLLDKINSAAGYDGSFGNSIHPTIDEMFSSHCSFTTLCGSEGR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2132 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Ssu3g2132 670 Gene3D Phosphorylase Kinase; domain 1 314 427 - -
Ssu3g2132 670 ProSitePatterns Protein kinases ATP-binding region signature. 358 379 IPR017441 GO:0005524
Ssu3g2132 670 Gene3D - 22 269 - -
Ssu3g2132 670 ProSiteProfiles Protein kinase domain profile. 352 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2132 670 Gene3D Transferase(Phosphotransferase) domain 1 428 634 - -
Ssu3g2132 670 PANTHER - 24 664 - -
Ssu3g2132 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 261 IPR013320 -
Ssu3g2132 670 Pfam Legume lectin domain 24 262 IPR001220 GO:0030246
Ssu3g2132 670 Coils Coil 314 334 - -
Ssu3g2132 670 CDD lectin_legume_LecRK_Arcelin_ConA 24 261 IPR001220 GO:0030246
Ssu3g2132 670 Pfam Protein kinase domain 354 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2132 670 SUPERFAMILY Protein kinase-like (PK-like) 328 621 IPR011009 -
Ssu3g2132 670 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.2-RELATED 24 664 - -
Ssu3g2132 670 SMART serkin_6 352 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2132 Ssu-Chr3 69811037 69813049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2132 21 571 Receptor kinase-like Gene Family AT4G04960 60.360 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu3g2132 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2132 - - gmx:100807059 1072.38