Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2129 ATGGATCAGCTTGGAATTCAACCCCCCTCAACCAAGGTTGAAAGAAGGCTCGTAGAGAAAAACAGAAGAAACCAGATGAAGATCCTCTACAACAAACTCAACTCTCTTCTCCCCAACTATAACCCCAAGGAAGCATTACCACTGCCTGACCAAGTGGACGAGGCAATCAACTACATCCAGAGTTTGGAGGCAAAGGTGAAGATGGATCAGGAGAAGAAGGAGAAATTGCAGGGAACTAGGAAGAGGTCCCGTGGTTGCTTCTCCAATAGCGCTAATTTTGCTGCAACGGGTTTCCCAAAATCGCCACAACTTGAGATTCACGAAGTGGGTTCCTCTCTGCAAGTTGTTCTGACTTGTGGGTTAGACTACCAGTTCATTTTCTATGAAATCATTCGAATGCTGCATGAAGAGAACATAGAGGTTAGAAGTGCCAATTCCTCGGTGGCTGGAGACTCAGTGCTTCATGTTGTGCATGCAGAGATTCCTCAATCTTTTCTTCAATTCGGAGCCACCAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAATGGATCCTGCAGTGATGTGGAAACACAGCCCGAGTTGTGGGATTTTGAAATTGGTGCTGATGATATGTGGGCTTTCTAG 624 0.4535 MDQLGIQPPSTKVERRLVEKNRRNQMKILYNKLNSLLPNYNPKEALPLPDQVDEAINYIQSLEAKVKMDQEKKEKLQGTRKRSRGCFSNSANFAATGFPKSPQLEIHEVGSSLQVVLTCGLDYQFIFYEIIRMLHEENIEVRSANSSVAGDSVLHVVHAEIPQSFLQFGATKVSERLKRFVNGSCSDVETQPELWDFEIGADDMWAF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2129 207 Coils Coil 59 79 - -
Ssu3g2129 207 Pfam Helix-loop-helix DNA-binding domain 13 63 IPR011598 GO:0046983
Ssu3g2129 207 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 188 - -
Ssu3g2129 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 81 IPR036638 GO:0046983
Ssu3g2129 207 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 188 IPR015660 GO:0003700|GO:0006357
Ssu3g2129 207 Gene3D - 7 88 IPR036638 GO:0046983
Ssu3g2129 207 SMART finulus 16 68 IPR011598 GO:0046983
Ssu3g2129 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2129 Ssu-Chr3 69714756 69715855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2129 10 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.000 4.57e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g2129 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2129 - - gmx:100817883 371.703