Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2118 ATGTCACTACAGGCTCTGAAGGAAACTCTGCGACCTTGCTCAACCCAAAAACCCTcttcatcaaattcaattacCCAAACACAGCCCAATTCAATTCTCCGCGACAGCGATTCCCTCTTCCAAATCCATAGAAAACCCCCTAAATCCTCTCTTTCCCACCAGCTTCGCCGCCTTCACGACCCACTAACCCAAACACACTCCAAAAccctacaacaacaacaagaacaagaacaacaacaacaacaagaagagcCGAAGATAAAGAGAGCGAAATTCGCTTCACCCAAATTGCCACAGTTTCAACTTGATCACACTGGACCTTTCGAGCCTCTCCTCTTGTCTTCGCACGGAGAATTTCCCGTCGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAAGGAGTGAAGTTTTTGTATGGTTTGTATAAGAATAATCATGGAGGCATACTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTGTCTTTGGTAAAGAAGGACATTCTACTCTAATTGAAAACCGGGTAGAGAAAAGAGATCCTGCATTAATAATTTGCCCAACTTCTGTTATCCACAATTGGGAGAGCGAATTCTCCAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATCTGATATATGATAAATTGGAAGCACATCGAGTGGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGAAGTTCCTTGTCAGATGTCAACTGGAACATTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCCAAACTCTATAAAGCatgtttagaaattaaaacCCTAAGACGCTATGGTCTCACTGGGACTATAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGACTGGGTTACACCTGGATCCCTTGGAACACGGGAACACTTTCGTGAGTTCTATGATGAACCTCTTAAGCATGGCCAGAGATCAACTGCTTCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACATCTTGTGACCGTTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAgataacatcattttttgtgcAATGAGTGATGTGCAAAAACGTGTTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTCGAATGTTGCAAGAGGACAGTACCAGATGGAGTTATTTGGCCTTATCTGCATAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTAGTGGGTGGGAACACACAAAATGAAAGTTTCATGGGTCTCAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTGTTCTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTCGAGAAATTTCTCATACGAAGAGGTTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCaaacaagtATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCTAACCGTGTTGTAATATTTGATCCCAACTGGAACCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTTTGGACAGAAGCGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTATACTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCCGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGAGAGCTTTTTGGGATTTCCAATTTATTTCGAGATTTATCTGATAAGCTATTTACCAGTGAGATCATTGAATTGCATAAAGAACCTGGGCATGAAACAGAACAACCAGAAAACGTAAATCTGTCAGAAGAAACAAGTTCATCAGTATCAGAGTCAGAAACCAGATTATGTAATAAATCTGCGGGCGATGCAACAAGTAAACCAGATCTAGAGGACCTTGGTATTGTCTATACTCATCGCAATGAAGACGTTGTCAACTTCGGACCAGGGATTCAAGGGAAAATAAGCTTACCTTCAAATGCCAGCCTAGGCAATCCAAGCATCTCTTTGGATCACCAAAGAAAAAAACCAGATTGTGTACCTAAAAAACAGAAAGTTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGGCTCCTTGCTCAGTCTACGGGCATGGGAGAGCTTGCTTTTAGCAAATGGTTACTATCGGCGACTCCActggagagagagaaagttctTCTCGactacaagaagaaaaaaaagataccCAATGGTTGA 2601 0.3983 MSLQALKETLRPCSTQKPSSSNSITQTQPNSILRDSDSLFQIHRKPPKSSLSHQLRRLHDPLTQTHSKTLQQQQEQEQQQQQEEPKIKRAKFASPKLPQFQLDHTGPFEPLLLSSHGEFPVVQVPASINCRLLEHQREGVKFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAVFGKEGHSTLIENRVEKRDPALIICPTSVIHNWESEFSKWSNFSVSIYHGANRDLIYDKLEAHRVEILITSFDTYRIHGSSLSDVNWNIVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVTPGSLGTREHFREFYDEPLKHGQRSTASDRFVQIANKRKQHLVTVLHKYMLRRTKEETIGHLMMGKEDNIIFCAMSDVQKRVYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRTVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGPDIDLVGGNTQNESFMGLSDVKHCGKMRALEKLLFSWFSQGDKVLLFSYSVRMLDILEKFLIRRGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHKEPGHETEQPENVNLSEETSSSVSESETRLCNKSAGDATSKPDLEDLGIVYTHRNEDVVNFGPGIQGKISLPSNASLGNPSISLDHQRKKPDCVPKKQKVPLIDERKRTQYRLLAQSTGMGELAFSKWLLSATPLEREKVLLDYKKKKKIPNG 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2118 866 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 41 844 - -
Ssu3g2118 866 MobiDBLite consensus disorder prediction 64 80 - -
Ssu3g2118 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 365 IPR027417 -
Ssu3g2118 866 SMART helicmild6 550 633 IPR001650 -
Ssu3g2118 866 MobiDBLite consensus disorder prediction 1 48 - -
Ssu3g2118 866 Gene3D - 377 721 IPR027417 -
Ssu3g2118 866 MobiDBLite consensus disorder prediction 726 748 - -
Ssu3g2118 866 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 315 IPR014001 -
Ssu3g2118 866 Pfam SNF2-related domain 147 405 IPR000330 GO:0005524|GO:0140658
Ssu3g2118 866 MobiDBLite consensus disorder prediction 1 87 - -
Ssu3g2118 866 MobiDBLite consensus disorder prediction 714 750 - -
Ssu3g2118 866 Pfam Helicase conserved C-terminal domain 521 633 IPR001650 -
Ssu3g2118 866 CDD SF2_C_SNF 515 644 - -
Ssu3g2118 866 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 677 IPR001650 -
Ssu3g2118 866 PANTHER SNF2/RAD54 FAMILY MEMBER 41 844 - -
Ssu3g2118 866 SMART ultradead3 128 323 IPR014001 -
Ssu3g2118 866 Gene3D - 112 364 IPR038718 -
Ssu3g2118 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 688 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2118 Ssu-Chr3 69499779 69506726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2118 152 663 RAD5 or RAD16-like Gene Family AT1G02670 26.964 8.39e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu3g2118 SNF2_N 7e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2118 K20098 - gmx:100781003 1581.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2118 3 69499779 69506726 Ssu3g2118 3 69499779 69506726 ECH