Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2116 ATGGTGTGTTTGGGGTTTGACATGGTTGAGGTTGACTCTAAAAGATTGGAACTTGAGAGGAGGGAAGTGGGGATTTTTCCGAGAATTGCATGTGGGTGGTTGGTGTTTATGCTGTTTCTGAGTCCAGTGGCAGGTTTGAGACCCTTAAGGGACAGAGCTAATTCCTGGGGTGATGAGTGGGTTTTTGCAAGAAAAGACGAAAGTGACTTGGGTCCATTTTCACAATGGAACATAACTGGAACTTACAGAGGGACTTGGAAGTTTTTAGATACTACAAATGGCTCTACAAGATTTCCAGacatcagaaaaataaatggaaattcTGTAATTGAATTAGTTAGTATGTCCACAAAGATAACTGGTGTACATTATGTGCAGgGGGTAGTCATATTCCATGATGTATTTGACAATGAATACAATGTTGGTGGCGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTATAGGCAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGGGGGGTTAAATCAGGATGGAGATTATATTTTATCCAATCCGTATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCACGACATAAGATGTGGAGAAGAAAGCATTCTCCATTGCATGGCATGGAGAAACATTGCAATGTAGAAATCGCTGCACAGGTTTCACGCCTGTCATCATCAAAACATGAAGGGGAGCATTTTCAGCTAGAAGGGTTAATGGAGAGTCCATCTGTGGACGACGATGGGGACTGCTTCTCACCTTTACAGTTAAATGCAACATCTATTAACATTGAAGTCTACTATAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCATTTTTGCAAGTTCTTCTATTAATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTTTCAATATTAATGATTGGTCAGCAAGCTATAGTAGATGCTTATCTTTGCCTTATACATTTGACTGCAGGAATACTAGTTGAAACCTTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTCGCCATCTGGAAGGCAAGTAGGCCTTTTAGCAATGGTGAAGGTTGGGATACAATGAGGCGTGAATTGTCAGTTTTATACAGCCGTTTCTATGGGATCCTATTGGGAGGCATTCTGCTCATGTATGAATTCCATAATCATTTGAGACCTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATTGCCAATGTTGTTCGTGATTCACGCAAGCCATTGCATCCTCATTATATCTTAGGCATAACTGTTACTCGGCTAGCAAtcccattatatatttttggttgtcCTAACAACTTCTTGCGCATAGAACCAGATCAGGGCTGGTGCATTTGTTTGGCTATATTTGTTGGACTTCAAGCTGCAATTCTCTTACTTCAGCACTATTTTGGGTCCTTGTGGTTCATTCCTCGTCAGTTTCTTCCTGAGAAATACAGCTATTATAGGAGGTTTGCTCCTGATACAAATCATGCCACAGACTGTGTTATATGCATGACAGCCGTTGATCTTTCTCCACGATCTAATGATTGCATGGTGACCCCTTGTGATCATTTTTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCCCTCTTCCACCTGCATGA 1722 0.4013 MVCLGFDMVEVDSKRLELERREVGIFPRIACGWLVFMLFLSPVAGLRPLRDRANSWGDEWVFARKDESDLGPFSQWNITGTYRGTWKFLDTTNGSTRFPDIRKINGNSVIELVSMSTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPYRQLRMVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHKMWRRKHSPLHGMEKHCNVEIAAQVSRLSSSKHEGEHFQLEGLMESPSVDDDGDCFSPLQLNATSINIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIVDAYLCLIHLTAGILVETLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPFSNGEGWDTMRRELSVLYSRFYGILLGGILLMYEFHNHLRPILLLVYSFWIPQIIANVVRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFLRIEPDQGWCICLAIFVGLQAAILLLQHYFGSLWFIPRQFLPEKYSYYRRFAPDTNHATDCVICMTAVDLSPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2116 573 SMART ring_2 523 566 IPR001841 -
Ssu3g2116 573 ProSiteProfiles Zinc finger RING-type profile. 523 567 IPR001841 -
Ssu3g2116 573 SUPERFAMILY RING/U-box 505 572 - -
Ssu3g2116 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 573 IPR013083 -
Ssu3g2116 573 PANTHER RING ZINC FINGER PROTEIN 16 573 - -
Ssu3g2116 573 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 16 573 - -
Ssu3g2116 573 Pfam Ring finger domain 522 567 IPR001841 -
Ssu3g2116 573 SMART ringv_2 522 567 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2116 Ssu-Chr3 69416870 69429424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2116 523 570 C3H Transcription Factor Family AT4G12190 39.583 8.92e-09 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2116 3 69416870 69429424 Ssu3g2116 3 69416870 69429424 ECH