Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2115 ATGGCTTCAGCTTCAGCATCTTATTCCTTTACCATTAGTGTGCTATTCCTCCTTTTTCTGCACTTGTCATGTTTCACAAACAACCTTAATGCAGAGCACAGCAATGCCAACAGTCACAACCGCCACCACAGGCACCAACACACTCAGAATCCTCCCTTAAACCCAAGGCTTCACATGGCTTTTCTTGGGCTCCAAGCATGGAAGCATGTGATCTACTCAGACCCAAAAAACTTCACTGCCAACTGGGTAGGTCCTTCAGTTTGCAACTACACAGGTGTGTACTGTGCTCCCTCACCTGATGACCCTAAAGTGACAGTTGTGGCTGGCATTGACCTTAACTTTGCAGACATAGCAGGGTTCCTACCCAATGAAATAGGCCTTCTCTCAGACCTTGCACTCCTTCACCTCAGCAACAACCGCTTCTGTGGCATCCTCCCAATGTCCTTGACCAACCTCACTCTACTCTATGAGCTTGATCTTAGCAACAACAGGTTTGTTGGACCCTTTCCTTTGGTTGTGCTTTCCCTTCCTATGCTCAACTACCTTGACCTGCGCTACAATGAATTTGAAGGGCCATTGCCTCCTCAACTCTTCAACAAAACCTTTGATGCCATTTTTCTCAACAACAACCGCTTCAGCAGTTCTATTCCTCCAAACTTAGGCAAAAACTCAGCTTCTGTCTTGGTCTTTGCCAACAACAAATTTGGAGGATGTCTCCCTGAAAGCATAGTAAACTTTGCTGACACTTTGGAGGAACTTGTGCTAATCAACACAAGCTTGTCAGGTTGTTTGCCACAGCAAGTGGGGTTTCTCTACAAACTGAGAGTGTTGGATGTGAGTTTCAACAGCATTGTTGGCCCCATACCTTACAGCCTTGCAGGGTTGTCTCACTTGGAGCAGCTAAACTTGGGGCACAACATGATGAGTGGCATAGTCCCTATGGGAGTTTGTGAGCTGCCAAACTTGGCAAACTTCACTTTCTCTTACAACTTCTTCTGTGAGGAAGAGGGTATCTGTCAGAATTTGACATCAAAGAGAATAGTGTTTGATGACAGAAGGAACTGTTTGCCAGAGAAGCCACTGCAGAGGAGCCAAAAGGAATGCAGTGCCAAACTTGAACACCCAGTTGATTGCTCTGAGCTTTGCTGTGTTGCGGGGAGCAATGCCTCTTCTGCTGGTTCAGTGGCTGTCCCACCTGCTGCAATTCCTGCAGCAATGCCTGTGTCTGCACCTCTGCTTGCACCAAGCTACCCTTAA 1257 0.4702 MASASASYSFTISVLFLLFLHLSCFTNNLNAEHSNANSHNRHHRHQHTQNPPLNPRLHMAFLGLQAWKHVIYSDPKNFTANWVGPSVCNYTGVYCAPSPDDPKVTVVAGIDLNFADIAGFLPNEIGLLSDLALLHLSNNRFCGILPMSLTNLTLLYELDLSNNRFVGPFPLVVLSLPMLNYLDLRYNEFEGPLPPQLFNKTFDAIFLNNNRFSSSIPPNLGKNSASVLVFANNKFGGCLPESIVNFADTLEELVLINTSLSGCLPQQVGFLYKLRVLDVSFNSIVGPIPYSLAGLSHLEQLNLGHNMMSGIVPMGVCELPNLANFTFSYNFFCEEEGICQNLTSKRIVFDDRRNCLPEKPLQRSQKECSAKLEHPVDCSELCCVAGSNASSAGSVAVPPAAIPAAMPVSAPLLAPSYP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2115 418 Gene3D Ribonuclease Inhibitor 230 369 IPR032675 -
Ssu3g2115 418 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 417 - -
Ssu3g2115 418 Pfam Leucine rich repeat 273 330 IPR001611 GO:0005515
Ssu3g2115 418 SUPERFAMILY L domain-like 69 347 - -
Ssu3g2115 418 PANTHER EXTENSIN-LIKE PROTEIN 1 417 - -
Ssu3g2115 418 Gene3D Ribonuclease Inhibitor 62 229 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2115 Ssu-Chr3 69411559 69412815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2115 54 407 Trihelix Transcription Factor Family AT2G15880 51.412 1.34e-132 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2115 - - gmx:100782629 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2115 3 69411559 69412815 Ssu3g2115 3 69411559 69412815 ECH