Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2113 ATGGTGCAGTTTCCGCGCTTCAACCTTCAGTTCTCAGATTCCGAGGCTCTCACAcagttttcaaatttcaactcAATGACCACCACGCTCAGCTACTCACCCCGTTTCAGAATCGCCGTCGACGCTCCCCACGATCCTCTCTTACCCTTTCTCTGGTCTATCAGGAAAGCCCTAGAAGCTTCCAACACTCCTGCTCCGAATCTCAGTAGCTTACTCAGAGATTGCATCAGAAACTTCAAGGACAATGACCGGTACCGAAACGACGTCAGATTCCTCAAGATCTGGCTCCTCTATATGGGAGTTAGTGGTGattttaatagtgttttcaaAGAAATGCTGGACAGTAATGTATGTGCCAATAATTCTTCACTTTACGTGTGGTCTGCGAGTTTTTTTGAGTTGAAGGGAAGATTGCACGATGCTCTCACCATCTATCAGCTTGGCATTTTCAGGAATGCGGAGCCAATTGAGTGGTTGAAAAAGGCGCAGAccttatttctcaatagaaTTTCTGAAATACAGAATGCTGCTTCAAGTCAGAAGGTTGATAATAAAGAATCCATGAAATTGGAAAATAATGGCATTAATCCTTGGGACAAATCCACCATCGATAGCCTGTTGAAGAAgatatatcctttaattatgaaatttgatGGGTATCGTTCAAGCACTAAATCATACACAGGAAAAGTGGCCTTATCCACGTTGAAGAATTCATCAAGGAATAAAGTTATAGAGATAGGTGGAATGAAGTACCATATCAAGGGCTGTGCTGGACAGGGTGGTTTTGCCCAAGTATATAAGGCAAATGCCGACAATGATCCTGACAATGTTGTTGCACTAAAGATACAAAAGCCGGCTTTCCCTTGGGAATTTTACATGTATCGTCAGCTTGATCAGCGCATCTTAGATAGAGAGAGGTCAAGTTATGGTTTCGCTCACAGAATTCATCTCTATTCTGACTGTAGCATACTCGTCTGTGACTATTTAGCTAATGGGACACTACAGGATGTCATAAACTCGTATGTCGTCATAGGAAAATCCATGGAAGAAGTGTTATGCATTTATTACACAACAGAAATGTTACACATGGTTGAAACTTTGCATGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTAATTCGCTATGCTAGGGGTAATCTTTCAGAAGATGGGTTCTTGGACCGAAGTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTGCATCTCTTTCCAGATCACACACTATTTAAGGGAGATTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCAAGAGGATAAGCCGTGGAAATTTCAGGTAGATGCATATGGCCTTTGTGCTATTGTCCATATGATGTTGCATAATACCTACATGGAAATCGTCAAAAAAGAACAATCTGATGGGGGCTACGTGTATCTTCCCAAACTACCCTTTAAACGTTACTGGAACATTGAGCTCTGGAAGAGTTTCTTCAGTAAGATGCTAAACCAATACCCCCATGATGATGATAGGAGGTTGCTGCGGGATTTGAAGAAGTCCTTCCAGGACTATATGGGCTCCAATCCGCAGCTTATAAAGAAACTAAAGGAGTTACTCTCAAAGCAAAGGGCTTCCTTGTGTTCTGCTTAA 1668 0.4113 MVQFPRFNLQFSDSEALTQFSNFNSMTTTLSYSPRFRIAVDAPHDPLLPFLWSIRKALEASNTPAPNLSSLLRDCIRNFKDNDRYRNDVRFLKIWLLYMGVSGDFNSVFKEMLDSNVCANNSSLYVWSASFFELKGRLHDALTIYQLGIFRNAEPIEWLKKAQTLFLNRISEIQNAASSQKVDNKESMKLENNGINPWDKSTIDSLLKKIYPLIMKFDGYRSSTKSYTGKVALSTLKNSSRNKVIEIGGMKYHIKGCAGQGGFAQVYKANADNDPDNVVALKIQKPAFPWEFYMYRQLDQRILDRERSSYGFAHRIHLYSDCSILVCDYLANGTLQDVINSYVVIGKSMEEVLCIYYTTEMLHMVETLHGVGLIHGDFKPDNLLIRYARGNLSEDGFLDRSGPWCDQGLCLVDWGRGIDLHLFPDHTLFKGDCRTSGFRCIEMQEDKPWKFQVDAYGLCAIVHMMLHNTYMEIVKKEQSDGGYVYLPKLPFKRYWNIELWKSFFSKMLNQYPHDDDRRLLRDLKKSFQDYMGSNPQLIKKLKELLSKQRASLCSA 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2113 555 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 39 185 IPR015661 GO:0007094
Ssu3g2113 555 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 173 554 IPR015661 GO:0007094
Ssu3g2113 555 Gene3D Transferase(Phosphotransferase) domain 1 250 552 - -
Ssu3g2113 555 PANTHER BUB1 KINASE, ISOFORM A-RELATED 39 185 - -
Ssu3g2113 555 PANTHER BUB1 KINASE, ISOFORM A-RELATED 173 554 - -
Ssu3g2113 555 Pfam Protein kinase domain 252 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2113 555 SUPERFAMILY Protein kinase-like (PK-like) 251 528 IPR011009 -
Ssu3g2113 555 Gene3D - 35 188 - -
Ssu3g2113 555 ProSiteProfiles BUB1 N-terminal domain profile. 34 187 IPR013212 -
Ssu3g2113 555 SMART mad3_bub1_i 37 149 IPR013212 -
Ssu3g2113 555 Pfam Mad3/BUB1 homology region 1 41 149 IPR013212 -
Ssu3g2113 555 SMART serkin_6 252 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2113 555 ProSiteProfiles Protein kinase domain profile. 252 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2113 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 373 385 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2113 Ssu-Chr3 69386076 69390942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2113 246 396 MAP Kinase Kinase Kinase Kinase AT3G15220 28.662 8.00e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Ssu3g2113 Pkinase 3.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2113 K02178 - gmx:100783171 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2113 3 69386076 69390942 Ssu3g2113 3 69386076 69390942 ECH