Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu3g2112 | atgCCCGCTCAGAAGCGTTCCTTCCCTGACTCTCCTAACGATCACCACCGCCAAACCAAGCAACACggagaagaagaagcagaaGAACAAACACGGCAACCACAACAAGAAGAAGATAATAACAAATCAGATGATTCTGACCACTCCCCAACGTCTCCCTCCGAAGACAAATCCGAATTTGTGTTTGTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACACGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCGATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCCTAATTGCAGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGCAGAGATACACCCAGTTCGTTTGTGACAAGATCACAGCGCAATCAACGAAATATTCTTTCTAGGAGACAAAACCAAGTGATTGATAATCAAGGATCTGAGGATAACGAGGAGGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAGAGGCGAACCAGAGTTCGCCCTTCTCAGCCCTCATCATCAACAGCTAGTCCTGATGGTGGATGCATAGAAAGTGATATGGATATAAGTCGAGAAAATCGAGGAATTTCTTCTAGACAGGTGTCAAAACCTCAAAAATTAACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGCGGTAACTGGTAG | 921 | 0.4332 | MPAQKRSFPDSPNDHHRQTKQHGEEEAEEQTRQPQQEEDNNKSDDSDHSPTSPSEDKSEFVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRRDTPSSFVTRSQRNQRNILSRRQNQVIDNQGSEDNEEENDNNEKDSSSTDERCTELRQRRRKRRTRVRPSQPSSSTASPDGGCIESDMDISRENRGISSRQVSKPQKLTWGRGGFRSHTRHGSGNW | 306 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu3g2112 | 306 | SUPERFAMILY | RING/U-box | 61 | 145 | - | - | |
Ssu3g2112 | 306 | CDD | RING-HC_RING1_like | 74 | 114 | - | - | |
Ssu3g2112 | 306 | PANTHER | OS11G0578200 PROTEIN | 14 | 304 | IPR044592 | - | |
Ssu3g2112 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 144 | IPR013083 | - | |
Ssu3g2112 | 306 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED | 14 | 304 | - | - | |
Ssu3g2112 | 306 | SMART | ring_2 | 74 | 113 | IPR001841 | - | |
Ssu3g2112 | 306 | Coils | Coil | 143 | 163 | - | - | |
Ssu3g2112 | 306 | MobiDBLite | consensus disorder prediction | 173 | 306 | - | - | |
Ssu3g2112 | 306 | MobiDBLite | consensus disorder prediction | 9 | 58 | - | - | |
Ssu3g2112 | 306 | ProSitePatterns | Zinc finger RING-type signature. | 90 | 99 | IPR017907 | - | |
Ssu3g2112 | 306 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Ssu3g2112 | 306 | MobiDBLite | consensus disorder prediction | 187 | 210 | - | - | |
Ssu3g2112 | 306 | ProSiteProfiles | Zinc finger RING-type profile. | 74 | 114 | IPR001841 | - | |
Ssu3g2112 | 306 | Pfam | Zinc finger, C3HC4 type (RING finger) | 73 | 113 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu3g2112 | Ssu-Chr3 | 69370779 | 69376164 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu3g2112 | 67 | 137 | C3H Transcription Factor Family | AT3G23060 | 35.135 | 2.54e-07 | 50.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu3g2112 | K10695 | - | gmx:100801738 | 472.241 |