Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2112 atgCCCGCTCAGAAGCGTTCCTTCCCTGACTCTCCTAACGATCACCACCGCCAAACCAAGCAACACggagaagaagaagcagaaGAACAAACACGGCAACCACAACAAGAAGAAGATAATAACAAATCAGATGATTCTGACCACTCCCCAACGTCTCCCTCCGAAGACAAATCCGAATTTGTGTTTGTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACACGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCGATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCCTAATTGCAGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGCAGAGATACACCCAGTTCGTTTGTGACAAGATCACAGCGCAATCAACGAAATATTCTTTCTAGGAGACAAAACCAAGTGATTGATAATCAAGGATCTGAGGATAACGAGGAGGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAGAGGCGAACCAGAGTTCGCCCTTCTCAGCCCTCATCATCAACAGCTAGTCCTGATGGTGGATGCATAGAAAGTGATATGGATATAAGTCGAGAAAATCGAGGAATTTCTTCTAGACAGGTGTCAAAACCTCAAAAATTAACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGCGGTAACTGGTAG 921 0.4332 MPAQKRSFPDSPNDHHRQTKQHGEEEAEEQTRQPQQEEDNNKSDDSDHSPTSPSEDKSEFVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRRDTPSSFVTRSQRNQRNILSRRQNQVIDNQGSEDNEEENDNNEKDSSSTDERCTELRQRRRKRRTRVRPSQPSSSTASPDGGCIESDMDISRENRGISSRQVSKPQKLTWGRGGFRSHTRHGSGNW 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2112 306 SUPERFAMILY RING/U-box 61 145 - -
Ssu3g2112 306 CDD RING-HC_RING1_like 74 114 - -
Ssu3g2112 306 PANTHER OS11G0578200 PROTEIN 14 304 IPR044592 -
Ssu3g2112 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 144 IPR013083 -
Ssu3g2112 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 14 304 - -
Ssu3g2112 306 SMART ring_2 74 113 IPR001841 -
Ssu3g2112 306 Coils Coil 143 163 - -
Ssu3g2112 306 MobiDBLite consensus disorder prediction 173 306 - -
Ssu3g2112 306 MobiDBLite consensus disorder prediction 9 58 - -
Ssu3g2112 306 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
Ssu3g2112 306 MobiDBLite consensus disorder prediction 1 58 - -
Ssu3g2112 306 MobiDBLite consensus disorder prediction 187 210 - -
Ssu3g2112 306 ProSiteProfiles Zinc finger RING-type profile. 74 114 IPR001841 -
Ssu3g2112 306 Pfam Zinc finger, C3HC4 type (RING finger) 73 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2112 Ssu-Chr3 69370779 69376164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2112 67 137 C3H Transcription Factor Family AT3G23060 35.135 2.54e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2112 K10695 - gmx:100801738 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2112 3 69370779 69376164 Ssu3g2112 3 69370779 69376164 ECH