Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2108 ATGAATGGCAGAGAAATCCTCCACAAGATGAAGGCGAAAGCAGGGCTTGGAACATCAGCACCGGACACAGGCAAAGGAAAAAGCAAATTATCAAAACACATTACACATGGCTTTCACTTGATGAAGGGAAAATCGGGGCATCCCATGGAAGATTATTTAGTTTCAGAATTTAAGCAAGAAAAGGACAGAGAATTAGGCTTGTTTGCAATATTTGATGGCCACTTAGGCCATGATGTTGCAAGCTATTTGCAGAACAACCTCTTTCAAAGCATTTTGAAACAGCATGATTTTTGGACTGAGACAGAAAGCGCAGTGAAGAGAGCTTACCTTGAAACAGATGAGAAAATATTGGAACAAGCACTTGAGTTGGGGCGAGGAGGGTCAACAGCTGTGACTGCAATACTGATTGATGGTGAGAAGCTTGTAGTAGCAAATGTTGGTGACTCAAGAGCTGTTATTTGTGAGAATGGAAAGGCCAGGCAACTATCGGTGGATCATGAACCaagcaaggaaaaaaaatctattgagAGGCGTGGGGGCTTTGTATCAAACATTCCAGGAGATGTCCCAAGAGTAGATGGACAGCTGGCAGTAGCGAGGGCTTTTGGTGACAGGAGCCTGAAGATGCATCTTAGTTCAGAACCTGATGTGTTTGTAGGGGAAGTAGATCAACATACAGAGTTTCTTATTCTGGCTAGTGATGGAATATGGAAGGTTATGTCAAACCAAGAAGCAGTGGATTCTATTAGACAAATAAAGGATGCTCAAGCTGCAGCAAAGCACTTGATAGAAGAGGCCGTTTCCAGGAAAAGTAAGGATGACATATCCTGCATTGTTGTGAAGTTCCAATGA 852 0.419 MNGREILHKMKAKAGLGTSAPDTGKGKSKLSKHITHGFHLMKGKSGHPMEDYLVSEFKQEKDRELGLFAIFDGHLGHDVASYLQNNLFQSILKQHDFWTETESAVKRAYLETDEKILEQALELGRGGSTAVTAILIDGEKLVVANVGDSRAVICENGKARQLSVDHEPSKEKKSIERRGGFVSNIPGDVPRVDGQLAVARAFGDRSLKMHLSSEPDVFVGEVDQHTEFLILASDGIWKVMSNQEAVDSIRQIKDAQAAAKHLIEEAVSRKSKDDISCIVVKFQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2108 283 Pfam Protein phosphatase 2C 47 275 IPR001932 -
Ssu3g2108 283 SMART PP2C_SIG_2 49 282 IPR001932 -
Ssu3g2108 283 CDD PP2Cc 36 282 IPR001932 -
Ssu3g2108 283 PANTHER PROTEIN PHOSPHATASE 2C 1 283 IPR015655 GO:0004722|GO:0006470
Ssu3g2108 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Ssu3g2108 283 SMART PP2C_4 25 280 IPR001932 -
Ssu3g2108 283 Gene3D - 17 283 IPR036457 -
Ssu3g2108 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Ssu3g2108 283 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2108 Ssu-Chr3 69294704 69298505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2108 24 283 PP2C-type Phosphatase Gene Family AT4G28400 76.538 2.73e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2108 K17506 - gmx:100819846 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2108 3 69294704 69298505 Ssu3g2108 3 69294704 69298505 ECH