Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2107 ATGAGCACTGTTTTTTCAGAACACAAATTCCAACTTCAACCCTCCCACCAACTTCTCTCCCTCAAGAAATCCCTGAGGGACATTGACATCCCCCCAAGGAAGAAACTCCCCACCCGCCGCTCCGCCGCCGTCCACGGCGGCGCCGGCGACATGTTTTCCGACGAGACCCTCCTTCACAAATATCTTCCCCACAATGAATCCGCGGACTCTGACGACAATGACGACAACTCCGGCGCCCCTTATGCCTCCGACGAGTTCCGCATGTTCGAGTTCAAGGTCAAGTGGTGCACACGTAGCCGGAGCCATGACTGGACAGACTGTCCCTTTGCGCACCCCGGCGAGAAGGCTCGCCGCCGCGACCCTCGCCGGGTTCACTACTCTGGGACAGTCTGTCCAGAGTTTCGCCGCGGCCAGTGCGGCCGTGGCGATGCATGTGAATTCTCTCACGGCGTGTTTGAGTGCTGGTTGCACCCTTCTAGGTATAGAACCGAGGCTTGCAAAGATGGCAAGAATTGCAAGCGAAAAGTTTGCTTCTTCGCTCACACCCCTCGCCAACTCAGGGTTTTGCCTCTTAACAATGAcgacgacaacaacaacaacaacaaaaagtgCACCAATATGAGCcctcataataataacaaacactGTTGTTTGTTTTGTCATTGCTCTTCTTCTTCAACTTGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTCCTTTGtcaccttcttcttcttattcttcCCCTAACCACCATGTTGTGAACTATAGGGATGTGTTTTCTGAGCTTGTGTGTTCCATGGAGGGTTTGAGTTTTGGCGAGGCTTCACCTGTGTCTGCTCCTAAGCCTCACAGTTTGTCTTGGCTTGATGTTTCTGAGGATCAGCAACAGTTCAATATTCTTTCACCAACCATCACTACTTGTGCAACTTTTTCCAATAATGGGAACGGGAGATTTTTGAGGGAAGAAAGTGGGGTTGTTGTTGATGATGTCATTGCCCCGGATCTCGCGTGGGTGAATGACTTGCTGATGTAG 1047 0.4804 MSTVFSEHKFQLQPSHQLLSLKKSLRDIDIPPRKKLPTRRSAAVHGGAGDMFSDETLLHKYLPHNESADSDDNDDNSGAPYASDEFRMFEFKVKWCTRSRSHDWTDCPFAHPGEKARRRDPRRVHYSGTVCPEFRRGQCGRGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPLNNDDDNNNNNKKCTNMSPHNNNKHCCLFCHCSSSSTCSPTSTLFGMSHFSPPLSPSSSYSSPNHHVVNYRDVFSELVCSMEGLSFGEASPVSAPKPHSLSWLDVSEDQQQFNILSPTITTCATFSNNGNGRFLREESGVVVDDVIAPDLAWVNDLLM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2107 348 Gene3D - 126 189 - -
Ssu3g2107 348 SMART c3hfinal6 125 151 IPR000571 GO:0046872
Ssu3g2107 348 SMART c3hfinal6 160 183 IPR000571 GO:0046872
Ssu3g2107 348 ProSiteProfiles Zinc finger C3H1-type profile. 126 152 IPR000571 GO:0046872
Ssu3g2107 348 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 27 347 - -
Ssu3g2107 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 150 IPR000571 GO:0046872
Ssu3g2107 348 PANTHER UNKEMPT FAMILY MEMBER 27 347 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2107 Ssu-Chr3 69287452 69288498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2107 79 187 C2H2 Transcription Factor Family AT5G07500 67.890 2.64e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu3g2107 zf-CCCH 7.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2107 K23047 - pvu:PHAVU_011G125300g 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2107 3 69287452 69288498 Ssu3g2107 3 69287452 69288498 ECH