Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu3g2106 | ATGTTTGCATATATAATGACCCACCCACCTCCTCCTCTTCACACACCCAACACACAAGTGCGTAAACTTACTTTCATTCATTGCTTCGCATCGTCACCCACCATGGTCGCGAAGGACAAGACCGCGAAAACCAAGAAGCCCAGCAATGCCGACGAGGTCCACTACCGCGGCGTCCGGAAGAGGCCGTGGGGCCGCTACGCTGCCGAGATCAGGGACCCCGGCAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCCCGGGCCTACGACGCCGCCGCGCGCAACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCCCTCCCCCCAGCGAAAACAAAAACTACGTTGTTAACGACgacgacaacaacaacagccCCAGCCAGAGCAGCACCGTCGAGTCCTCCGCCCCGGAGCGTGACCTCACGCGCCGCGCCGCCGTCATCGACCGCTTCCCCTTCCTCCCCCTCCAGCAGCAGCTCCTCGCGGCCCCCGTGCGCCCGGTTTTCTTCCTCGACCGGGCCGAATTTCTGGCCCAAAGATTCCCCGTGCGGTTCGAACCGGGCCCGGTTCAGAGCGACTCGGATTCGTCCTCCGTCGTGGATTGCCAGCCCAAAAGAGAGCTCAATCTCGATCTTAACTTGGCTCCGCCTAtggataattaa | 678 | 0.6003 | MFAYIMTHPPPPLHTPNTQVRKLTFIHCFASSPTMVAKDKTAKTKKPSNADEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARNFRGPKAKTNFPPPPSENKNYVVNDDDNNNSPSQSSTVESSAPERDLTRRAAVIDRFPFLPLQQQLLAAPVRPVFFLDRAEFLAQRFPVRFEPGPVQSDSDSSSVVDCQPKRELNLDLNLAPPMDN | 225 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu3g2106 | 225 | CDD | AP2 | 54 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Ssu3g2106 | 225 | MobiDBLite | consensus disorder prediction | 103 | 144 | - | - | |
Ssu3g2106 | 225 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 41 | 138 | - | - | |
Ssu3g2106 | 225 | SUPERFAMILY | DNA-binding domain | 54 | 111 | IPR016177 | GO:0003677 | |
Ssu3g2106 | 225 | Pfam | AP2 domain | 54 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Ssu3g2106 | 225 | Gene3D | AP2/ERF domain | 53 | 112 | IPR036955 | GO:0003700|GO:0006355 | |
Ssu3g2106 | 225 | PRINTS | Ethylene responsive element binding protein signature | 55 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Ssu3g2106 | 225 | PRINTS | Ethylene responsive element binding protein signature | 77 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Ssu3g2106 | 225 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 41 | 138 | - | - | |
Ssu3g2106 | 225 | SMART | rav1_2 | 54 | 117 | IPR001471 | GO:0003700|GO:0006355 | |
Ssu3g2106 | 225 | MobiDBLite | consensus disorder prediction | 112 | 141 | - | - | |
Ssu3g2106 | 225 | ProSiteProfiles | AP2/ERF domain profile. | 54 | 111 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu3g2106 | Ssu-Chr3 | 69265225 | 69265902 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu3g2106 | 52 | 223 | AP2-EREBP Transcription Factor Family | AT5G44210 | 53.333 | 1.46e-54 | 172 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Ssu3g2106 | AP2 | 6.4e-16 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu3g2106 | K09286 | - | gmx:100775465 | 244.202 |