Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2106 ATGTTTGCATATATAATGACCCACCCACCTCCTCCTCTTCACACACCCAACACACAAGTGCGTAAACTTACTTTCATTCATTGCTTCGCATCGTCACCCACCATGGTCGCGAAGGACAAGACCGCGAAAACCAAGAAGCCCAGCAATGCCGACGAGGTCCACTACCGCGGCGTCCGGAAGAGGCCGTGGGGCCGCTACGCTGCCGAGATCAGGGACCCCGGCAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCCCGGGCCTACGACGCCGCCGCGCGCAACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCCCTCCCCCCAGCGAAAACAAAAACTACGTTGTTAACGACgacgacaacaacaacagccCCAGCCAGAGCAGCACCGTCGAGTCCTCCGCCCCGGAGCGTGACCTCACGCGCCGCGCCGCCGTCATCGACCGCTTCCCCTTCCTCCCCCTCCAGCAGCAGCTCCTCGCGGCCCCCGTGCGCCCGGTTTTCTTCCTCGACCGGGCCGAATTTCTGGCCCAAAGATTCCCCGTGCGGTTCGAACCGGGCCCGGTTCAGAGCGACTCGGATTCGTCCTCCGTCGTGGATTGCCAGCCCAAAAGAGAGCTCAATCTCGATCTTAACTTGGCTCCGCCTAtggataattaa 678 0.6003 MFAYIMTHPPPPLHTPNTQVRKLTFIHCFASSPTMVAKDKTAKTKKPSNADEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARNFRGPKAKTNFPPPPSENKNYVVNDDDNNNSPSQSSTVESSAPERDLTRRAAVIDRFPFLPLQQQLLAAPVRPVFFLDRAEFLAQRFPVRFEPGPVQSDSDSSSVVDCQPKRELNLDLNLAPPMDN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2106 225 CDD AP2 54 111 IPR001471 GO:0003700|GO:0006355
Ssu3g2106 225 MobiDBLite consensus disorder prediction 103 144 - -
Ssu3g2106 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 41 138 - -
Ssu3g2106 225 SUPERFAMILY DNA-binding domain 54 111 IPR016177 GO:0003677
Ssu3g2106 225 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
Ssu3g2106 225 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Ssu3g2106 225 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Ssu3g2106 225 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Ssu3g2106 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 41 138 - -
Ssu3g2106 225 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Ssu3g2106 225 MobiDBLite consensus disorder prediction 112 141 - -
Ssu3g2106 225 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2106 Ssu-Chr3 69265225 69265902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2106 52 223 AP2-EREBP Transcription Factor Family AT5G44210 53.333 1.46e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu3g2106 AP2 6.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2106 K09286 - gmx:100775465 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2106 3 69265225 69265902 Ssu3g1754 3 53629995 53630552 ECH
Ssu3g2106 3 69265225 69265902 Ssu3g2106 3 69265225 69265902 ECH
Ssu3g2106 3 69265225 69265902 Ssu1g0459 1 10606951 10607619 ECH