Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2098 ATGCTTGCGGTGTCACCTTTGAGGAGCACCAAAGATGAAAAGAACCAAGGAGAGATGGAGGGTTTTTCcatggcaacaacaacaacaacaacctcaACGGATGATGTTGACTTTGGCGACCTTTCTGAAGGGAACTTGTTGGAGAGCATCAACTTCGACGACCTCTTCGTCGGCATCGACGTTGACGGAGATGTCTTGCCGGACTTGGAGATGTTCGGCGAGTTCTCCGTCAGCGCCGGCGAGGATTCGTCGGAGATGAACTCCTCAGCGGAGAACAGCAAGGTGGAGAATGATCAAAATATTATCGCTGCTtcaaagaaagaggaggaagataAAACTTCTTGTGCTGCCTCGGGTCAAGACTCGGAAGAGATAGTGAGCAAGAGGGGTGAACCCGTGGTGGTGAATCCGGCACCAAAGGATGgtggaaaaggaagaaaatctTCATCGGCTCAATcgaagaataataataatagtaataataatccTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAGCAGCTAGGAGTGGATAAGGCGGTGCCTTCACGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGCCACCTTCAGAAATATAGATCCCATAGGAAACATTTGCTAGCGCGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTATGGTGTGGCGGGCACGGGCGGAGGGAAGAGAGAGACGAGTCCGTGGCTAGCACCCACCATGGGTTTCCCTCCAATGACCCCAATGCATCATTTTAGACCTCTGCATGTATGGGGGCACCCCTCCATGGACCAGTCCTTCATGCACATGTGGCCTAAGCATCTGCCACATTCACCACCGCTCTCATGGCCACCGGCGCCGCCACATCAAGACCCTTCGTTTTGGCACCAACGGGCTCCAAACGCACTAATCCCAGGAACAGCTTGTTTTCCACAACCTCTGACACCAACGAGATTTGGAAGTCCCCCAGTCCCCGGCATCCCACCCCATGCCATGTACAAAGCAGATCACGGCATTGGCGTCCCCGGTCCCCGGCCCCTATTCGACTTCCATCCGTCAAAGGAGTGCATAGATGCAGCTATTGGAGATGTTTTATCGAAGCCATGGCTGCCACTACCTCTTGGACTTAAGGCTCCAGCACTTGCTAGTGTGCTGACTGAATTACAGAGACAAGGAATTCCAAACATTCCACCCTCTAGTGCTTGA 1272 0.4851 MLAVSPLRSTKDEKNQGEMEGFSMATTTTTTSTDDVDFGDLSEGNLLESINFDDLFVGIDVDGDVLPDLEMFGEFSVSAGEDSSEMNSSAENSKVENDQNIIAASKKEEEDKTSCAASGQDSEEIVSKRGEPVVVNPAPKDGGKGRKSSSAQSKNNNNSNNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLYGVAGTGGGKRETSPWLAPTMGFPPMTPMHHFRPLHVWGHPSMDQSFMHMWPKHLPHSPPLSWPPAPPHQDPSFWHQRAPNALIPGTACFPQPLTPTRFGSPPVPGIPPHAMYKADHGIGVPGPRPLFDFHPSKECIDAAIGDVLSKPWLPLPLGLKAPALASVLTELQRQGIPNIPPSSA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2098 423 MobiDBLite consensus disorder prediction 20 36 - -
Ssu3g2098 423 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 423 - -
Ssu3g2098 423 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 222 IPR006447 GO:0003677
Ssu3g2098 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 224 IPR017930 -
Ssu3g2098 423 MobiDBLite consensus disorder prediction 79 169 - -
Ssu3g2098 423 SUPERFAMILY Homeodomain-like 166 225 IPR009057 -
Ssu3g2098 423 Pfam Myb-like DNA-binding domain 171 220 IPR001005 -
Ssu3g2098 423 Gene3D - 165 226 - -
Ssu3g2098 423 MobiDBLite consensus disorder prediction 1 36 - -
Ssu3g2098 423 MobiDBLite consensus disorder prediction 146 167 - -
Ssu3g2098 423 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 423 IPR044825 GO:0003700|GO:0045893
Ssu3g2098 423 MobiDBLite consensus disorder prediction 80 100 - -
Ssu3g2098 423 MobiDBLite consensus disorder prediction 101 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2098 Ssu-Chr3 69108767 69113722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2098 1 374 G2-like Transcription Factor Family AT5G44190 41.439 1.37e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu3g2098 Myb_DNA-binding 5.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2098 - - gmx:100799248 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2098 3 69108767 69113722 Ssu3g2098 3 69108767 69113722 ECH