Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2095 ATGGGTCAACACAGGCAATGTGGGAGACCTTTTGAGGCTAAAATTTATGAACAACTGGACAagGGTGGTTCAAGGACACTGCATGAATATCAATTTATTCCAGAGAGGCCATCTGTTAGAAATGAGACATATGAGAGAGTTGCCCCCTCTATCCACTATAGTTCTCTTGATTGTGTTCCACATTCTAGGACTTTATTATCTAGTGGACGGTCTTTCCTCAATGGGAATGAATCTGCACCTTATGGATATGGAATTCAAGGTCAGATACCTGGTCTAAATCTTTTGTCTCAGCAAGGTAGGCAGAATCATCTTTTGCCGTCTGCTTCAGGAGAGAATGATGGTGTTCCACGAAAGAACCCATTTGTTGATGTAACTGCCAACATTCATAATGGGGCTCACCCTATAACTCTGATTGACAGCCCTCTAATGCTATCTGACGGGAGGGTTATCGATGCCGAGGAATTATCAAGGTTTCAAAGGAAGCGAAAGAATGAAGAGGCTAGAATGCAACGGGAACTTGAAGcccaagagaaaaaaattagaaaagagcTTGAAAAACAGGATATTTTAAGGCAAAAGAGAgaagaacaaataaagaaagaaatggagagGCATGAATGTGAAAGGCGGAAGGAAGAGGAAAGGTTGTTGCGTGAAAGACAGCGAGAGGAGGAGAGATACCAAAGAGAACAGAGGCGTGAACTAGAGCGGCGAAAGAAGTTTTTACAGAAGGAATCAATCAGAGCTGAGAAACTGAGACAGAAGGAAGAACTACACAAGGAGAAAGAGGCTGCAAGGATCAAAGCTGCCAATGAGAGAGCTATTGCTCGCAGAATTGCCAAAGAATCAATGGAACTCATTGAAGATGAATGCCTCGAACTTATGGAGTTAGCTGCATCAAAGAAGGGACTTTCTTCAATACTGGCTCTTGACTATGAAACTATTCAAAATCTTGAATTATATGGAGATGGGCGGACATCCTTCCCACCCAAGTCCGTACAGttgaaaaaaatcttttcaatcAAACCTTGGTCAGATTCTGATGAGAACGTAGGAAATCTTCTGATGGTTTGGAGGTTCTTGATTACCTTTGCTGATGTTCTTGGAATATGGCCTTTTACCTTGGATGAACTTACACAAGCTTTTCATGACCATGACCCAAGGTTGTTAGGTGAGATTCATATTGCACTTCTGAGATCCATTATAAAAGATATTGAAGATATTGCAAGAACACCCTCTACTGGGTTAGGATGTAACCAAAACAGTGTTGCAAACTCTGGTGGGGGGCATCCACAGGTAGTTAAAGGGGCCTATCAGTGGGGTTTTGATTTAAGAAATTGGCAGCGGCATTTAAATCCCTTAACATGGCCAGAGATTTTGCGACAATTTGCTTTGTCAGCAGGATTTGGGCCCCAGTTGAAGAAACAGAATATTGAACAGGTGCATCCTTGCAACAATAATgagGGCAATGATGGTAGAGATATAATTTCTAATCTACGCAGTGGAGCAGCTGTTAAAAATGCTGTTGCTATTATGCAAGAGAAGGGATTATCTAACCCAAGAAGATCTAGGCATTGCTTGACACCTGGAACTGTTAAATTTGCTGCATTTCATGTTCTTTCTCTTGAAGGAAGCCAAGGCCTTAATATATTGGAAGTTGCAGACAAGATTCAGaaaTCTGGACTTCGTGATCTTACAACAAGCAAAACACCAGAGGCTTCTATTGCCGCTGCTTTGTCTAGGGATACAAAACTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTCCTGCATATAGAAAGGCCCCAGCTGATTCTGAAGCAATTTATTCCGCTGCCAGGGAAAGAATCAGGATATTCAAAAGGGGATTTGTGGATGCAGAAGAAGCTGATGATGGTGAAAGGGATGAAGATTGTGAAAGTGATATGGCAGAAGATCCTGAGATTGATGATTTAGGAACTgaaacaaatacaaaaaaggAGAGTTCCAATTATGAGGCATTTAATGCAAACTCTGAGATGAGAAATGGAAAGGAAAGCGTTGAGGTTTTGCAAGCTCATGATGCTTGTCATGAGAAAGTGGGTGATGATTTAGCTTCAATTGTTGCCAAAGACTTCAATGAACATAAAGATGTTAGTACCTCTAATGAAATTGCTGTTTCCAGCAATGATGTGGTTAATCCTAATGTCGAAGGCATAGATGTTGATGAAAGCATTTCAGGTGAACCATGGGTACAAGGGCTTACAGAGGGAGAGTACTCAGATCTTAGTGTAGTGGAGCGTCTTTTCGCTCTTGTTGCTTTGATTGGTGTAGCAACTGAAGGAAATTCAATTCGTGTTGTACTTGAGGAACGTCTAGAAGCAGCAAATGCTTTAAAGAAGCAGATGTGGGCAGAAGCACAGCTTGACAAACGTCGTATCAAAGAGGATTACTTTGTTAAGATGCAGTCTGCCACTTATTTGGGCAAAACGAATGAGCCGGCTGTTATATTTCCCTCAGTAGAGTGTAAACGGAGCCCAGTGATTATTGTTGATGACAAAAATAGCAAGGCTTTGCTCACTTCCAATGACCTGCATGAACAGAGCAACGAACTACTGGAAAATCAGAATCATCTTCAGAGCTCTCCATTAGAAGTTAATATGCAGATGCAAGATTGTTCTACTGGCTATTCTTTCCAACAATCAGGATATGCTGTTGAAAAATCAAGGGCAAATTTAAAGTCATTCATTGGTCACTTGGCGGAGCAAAGTTACATGTATAGGTCATTGCCTCTTGGTTTGGATCGAAGACGTAATCGATACTGGCAGTTCATCACATCTGCTCAAAATGATCCAGGTTGTGGCAGGATTTTTGTGGAGTTGCATGATGGTCGTTGGAAGCTGATTGATTCTGAAGAGGGTTTTGATGCTTTATTGGCTTCTTTGGATGTACGTGGGATTAGGGAGTCCCACTTGCATATGATGTTGCAAAGAATTGAGATGTGCTTCAAAGAATCCGTTAGAAGGAATGTCCAAAATGTTAACATGAGCATGCAAAATGGAGACACTATCAAGAGACTCAAGACAGAAGCTGTTGAAATGGCTTCAGACCAAGATTGCAGTGCTAATATTCATTGTTGTTCTTCTGTATGCAATGATAATCTGGATGTATCAGAGACCTCAACATCTTTTGTGGTTCAGCTTGGAAGAAATGAAGCTGATAACAAGGATGCTTTTATGAGATATTGGGACTTTGAGAAATGGATGCAAAAGGAATGCCTAAATTCCTCAGTATTATGTGCAATGAAGTTTGGGAAGAAGAGGTGCCGCCAACTGCAGTCCATATGTGATTTGTGCCTTTGTGTCTATTTCTCTGGGGGAGCTCCATGCCCTTCCTGCCGTAGAACCTTCAGTGCTTGTAAGAGCAACTCTAGTTTTTCTGAACATATTGTTCATCCTGAAGGCAAAGTGAAGATTGGCATTGATTGTTTTCATGCTTCATCCTCGTTGCCTTTGAGGATGAGATTGCTCAAAATCTTCCTATCAATTGTTGAGGTAACCCTTCCCCAAGAAGCTCTGCAAACTCTTTGGAGAGACAGCTACAGGAAATCTTGGAGGACAAAACTGGATGCTTCCTCATCAAGTGAAGACCTTCTTCAGATATTGACTGGATTGGAAGGTGCTATAAAGAGGGAATATTTGGATTCAAACTATGAAACTACTGGTGAGCTGTTGGGTATGTTTAGTTCTTCTGGATGTCGCACTAATGATTCCATTGATGGTGAAAGGATACCTGTACTTCCATGGGTTCCATACACATCAGCTGCTGTAGCTCTAAGGCTGTTGCAACTTGATGCATGCATCTTTTACACCTCACAGCAGAAGCTGGAGTCTGAGAAGGATAAGAAAATCGGAATTGGGATGAAGCTTCCATCAAAACATGCTGCTGCAAAGAATTCCTACAATGCTGGTGCAATTGAAACGTCACGTCAAGCTGAACGTACTGTAGAGAACTGGGTTGATCTTGATCTTGGTACTGGTCTTACAAGCTACAGCAGAGGACAGAGGAGCCGACAAGGCTGTGGCCGTTCTCATGGTGGAAGATCATCATCAAAAGGGAGGGTTGTTAGTTCAAGATCAGGTTTTAAAAAGAGAAGCGCTACCTCTAGAAGCAGGAAAATGGGAAAATTACTTGGTTGGAAAGGGAGACCATGCGGACAAGGAGGAAATGTCCGTGGTCGTCGGAGCATTAGAAGCAGGCAGAAACCAGCAGCCCAGGTGGATGTGATCACTGGTGAGAGGGATACCGCAAAAGATGTCGTGGAGGAAGAAGCTGGTATCCTTGTCAGAGAGGAGATTAATGAAGTTGAAATGGAAGCCACTGCTCTTAATGCTAGTGGTTCAGAGAGATCAGGTTATGAAGATGATGATATTTATCAAGCACTGGGTGATGAGTATGATTATCTGGTGGATAATGGTGATGGATATCAGGGTGGATTTAGTGGGAAATCTGAGAACTTGTTAGATGGAATCCACTATAATGTGGATGTTGAAGAAGATGTGGATATAGATGACAATGGTGTTGATGATGGGCAAATTGATCTTGATGTTGAAGATTACATAATTGGGGGTGACTCAGATGCAGGGGACAACAGAGAAAAAAATGCAGAACCAAACATTGTTCCGGATGGAGTGGGTTCGACATCATCAGACTATAGTGATTAA 4707 0.4117 MGQHRQCGRPFEAKIYEQLDKGGSRTLHEYQFIPERPSVRNETYERVAPSIHYSSLDCVPHSRTLLSSGRSFLNGNESAPYGYGIQGQIPGLNLLSQQGRQNHLLPSASGENDGVPRKNPFVDVTANIHNGAHPITLIDSPLMLSDGRVIDAEELSRFQRKRKNEEARMQRELEAQEKKIRKELEKQDILRQKREEQIKKEMERHECERRKEEERLLRERQREEERYQREQRRELERRKKFLQKESIRAEKLRQKEELHKEKEAARIKAANERAIARRIAKESMELIEDECLELMELAASKKGLSSILALDYETIQNLELYGDGRTSFPPKSVQLKKIFSIKPWSDSDENVGNLLMVWRFLITFADVLGIWPFTLDELTQAFHDHDPRLLGEIHIALLRSIIKDIEDIARTPSTGLGCNQNSVANSGGGHPQVVKGAYQWGFDLRNWQRHLNPLTWPEILRQFALSAGFGPQLKKQNIEQVHPCNNNEGNDGRDIISNLRSGAAVKNAVAIMQEKGLSNPRRSRHCLTPGTVKFAAFHVLSLEGSQGLNILEVADKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVRPAYRKAPADSEAIYSAARERIRIFKRGFVDAEEADDGERDEDCESDMAEDPEIDDLGTETNTKKESSNYEAFNANSEMRNGKESVEVLQAHDACHEKVGDDLASIVAKDFNEHKDVSTSNEIAVSSNDVVNPNVEGIDVDESISGEPWVQGLTEGEYSDLSVVERLFALVALIGVATEGNSIRVVLEERLEAANALKKQMWAEAQLDKRRIKEDYFVKMQSATYLGKTNEPAVIFPSVECKRSPVIIVDDKNSKALLTSNDLHEQSNELLENQNHLQSSPLEVNMQMQDCSTGYSFQQSGYAVEKSRANLKSFIGHLAEQSYMYRSLPLGLDRRRNRYWQFITSAQNDPGCGRIFVELHDGRWKLIDSEEGFDALLASLDVRGIRESHLHMMLQRIEMCFKESVRRNVQNVNMSMQNGDTIKRLKTEAVEMASDQDCSANIHCCSSVCNDNLDVSETSTSFVVQLGRNEADNKDAFMRYWDFEKWMQKECLNSSVLCAMKFGKKRCRQLQSICDLCLCVYFSGGAPCPSCRRTFSACKSNSSFSEHIVHPEGKVKIGIDCFHASSSLPLRMRLLKIFLSIVEVTLPQEALQTLWRDSYRKSWRTKLDASSSSEDLLQILTGLEGAIKREYLDSNYETTGELLGMFSSSGCRTNDSIDGERIPVLPWVPYTSAAVALRLLQLDACIFYTSQQKLESEKDKKIGIGMKLPSKHAAAKNSYNAGAIETSRQAERTVENWVDLDLGTGLTSYSRGQRSRQGCGRSHGGRSSSKGRVVSSRSGFKKRSATSRSRKMGKLLGWKGRPCGQGGNVRGRRSIRSRQKPAAQVDVITGERDTAKDVVEEEAGILVREEINEVEMEATALNASGSERSGYEDDDIYQALGDEYDYLVDNGDGYQGGFSGKSENLLDGIHYNVDVEEDVDIDDNGVDDGQIDLDVEDYIIGGDSDAGDNREKNAEPNIVPDGVGSTSSDYSD 1568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2095 1568 MobiDBLite consensus disorder prediction 1516 1537 - -
Ssu3g2095 1568 MobiDBLite consensus disorder prediction 631 652 - -
Ssu3g2095 1568 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 2 1568 IPR044977 GO:0006357
Ssu3g2095 1568 MobiDBLite consensus disorder prediction 1345 1421 - -
Ssu3g2095 1568 Coils Coil 155 193 - -
Ssu3g2095 1568 MobiDBLite consensus disorder prediction 629 663 - -
Ssu3g2095 1568 Coils Coil 195 272 - -
Ssu3g2095 1568 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 741 784 IPR028942 -
Ssu3g2095 1568 Pfam DDT domain 349 404 IPR018501 -
Ssu3g2095 1568 MobiDBLite consensus disorder prediction 1345 1378 - -
Ssu3g2095 1568 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 2 1568 - -
Ssu3g2095 1568 ProSiteProfiles HARE-type HTH domain profile. 530 599 IPR007759 GO:0006355
Ssu3g2095 1568 SMART testlast3 348 407 IPR018501 -
Ssu3g2095 1568 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 922 993 IPR028941 -
Ssu3g2095 1568 Pfam HB1, ASXL, restriction endonuclease HTH domain 530 597 IPR007759 GO:0006355
Ssu3g2095 1568 ProSiteProfiles DDT domain profile. 348 407 IPR018501 -
Ssu3g2095 1568 MobiDBLite consensus disorder prediction 1516 1568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2095 Ssu-Chr3 68986940 68998966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2095 1 1335 Homeobox Transcription Factor Family AT5G44180 50.876 0.0 1212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Ssu3g2095 WSD 9.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2095 - - gmx:100797480 2479.13