Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2093 ATGTTCGTGTTCGTTCTCTTCTTCCtctactctctctctcctctgcccctctctctctctctaacccAGGACGGCCTCTTCCTCCTCGAGGCCCGGCGGCAGCTCTACGACCCGGCCGACTCCCTCTCCTCCTGGAACCCCGCCGACGCCACCCCCTGCAGGTGGCGCGGCGTCACCTGCGACCCCCGCACCGCCGCCGTCTCCGCCGTCGCCCTCCCAAACGCCGGCCTCTCCGGCCCCTTCCCCGCCGCCCTCTGCCGCCTCCCCTCCCTCTCCTCCCTCGACCTCTCCTCCAACCTCATCAACTCCTCCCTCGCCGCCGTCTCCCTCTGCCGCCGCCTCCGCCTCCTCGACCTCTCCGAAAACGCCCTCGTCGGCCCCATCCCGGACTCCCTCGCCGGACTCGCCGCGCTCCGCCACCTCGACCTCTCCGGCAACAACCTCTCCGGCGACATTCCGGCCACCCTCGCCGCCCTCCCCCGCCTCGAAACCCTGAACCTCGTGTTCAACCTCCTCGCCGGAACAATCCCCTCCTCCCTCGGCAACCTCACTTCGCTGAAACACCTTCAACTCGCTTACAACGCGTTCGCGCCGAGTCGCGTCCCGAGCCAACTCGGCAACCTCACCAACCTCGAAACGCTCTTTCTCGCGCAGTGCAACCTCGTGGGCCCCATTCCCGACGCCTTCGGTAACCTCGCGCGCTTAACGAACCTCGATTTGTCGCAGAACAGCCTCACCGGTTTCGTTCCGCAGTGGTTCACGTGCTTGAAGCGCGTGACGCAAATCGAGCTTTATAAAAACTCGCTCTCCGGGGAGTTGCCCAGGGGAATGTCGAACATGACGAGTTTGAAACTCTTCGACGCGTCGACGAACGAGTTGACTGGGACGATTCCCGCCGAGTTGTGCGAGTTGCCACTCGCGTCGTTGAATCTGTACGAGAACAAACTCGAAGGGTTTTTGCCGGGGGTTATTGCGCGTTCTCCGAACCTCTACGAACTCAAATTGTTCAGAAATAAACTTAACGGGACGTTGCCGAGTGATTTGGGGAGCAACTCGCCGTTGAACCACATTGACGTTTCGTTTAACTCATTTTCCGGCGAGATTCCGGCGAACATCTGCCGGCGGGGGGAGTTTGAGGAGCTAATCTTGATATACAATTCGTTTTCCGGGGAAATTCCGGCGAGTCTCGGGAACTGCAAGAGTTTGAAGCGGGTTCGGTTGAGGAACAATAACCTCTCTGGAACGGTTCCTGAAGGGTTCTGGGGTCTGCCCCATTTGCATTTGCTTGAGCTTTTGGATAATTCTCTTTCTGGGCACATTTCCAAGGCAATTTCTGGCGCTTataatctttcaaatttgttGCTTTCGAATAACCGGTTTTCTGGGTCGATTCCTGAGGAAATTGGGTTGTTGGAGAATCTTGTGGAGTTTGCTGCTAGTAATAATAATCTTTCGGGTTCAGTTCCGGGGAGTATGGGGAAGTTGAGCCAGTTGGTTAATCTTGATGTTAGTTATAATCAACTTTCTGGGGAACTTTTTGGTGGAATTGGTGAATTGGGTAAGGTCAGTTACCTTAATTTGTCACACAATAGGTTTGACGGTAATGTTCCAAGTGAATTAGGAAGCCTGCCCGTGCTTAATTATCTTGATCTTTCTTGGAACAATTTTTCCGGGGAGATTCCAGTGCAGTTGCAGAATTTGAAGCTCTCTGAGTTGAATTTGTCTTACAACCAGCTTTCTGGGGATATTCCTCCTCTTTATGCCAATGACAAGTATAAGATGAGTTTTATAGGGAATCCTGGCCTGTGTGTTCATCTCCCTGGACTTTGTGATTGTTCTGGTAAGAGTAAGAGTATTAGGAGGTTTGTGTGGATTCTGTGTTCCATATTTGTGCTTGCTGGAGTTGTGTTTGGGGTGGCCTGGTTTTACCTTAGGTACAGGAAGGTGAAGAAACTGAAGAAGGGGTTAAGCGCTTTGCGGTGGAAGTCGTTTCATAAGCTGGGGTTTAGTGAGTTTGAGGTTGCTAAGTTGCTGAGTGAGGACAATGTGATAGGAAGTGGAGCATCTGGGAAGGTGTACAAGGTGGTGCTTAGCAATGGTGAGGTGGTGGCGGTGAAGAAATTGTGTGGAGCACCTATGAATGTTGATGAAAGTGTTGGTTCTGGGAAAGATGAGTTTGATGTTGAAGTTGAGACGCTGGGGAGGATAAGGCATAAGAATATTGTGAGGTTGTGGTGTTGCTGCCACAGTGAGGATCGCAGGCTGCTGGTTTATGAATATATGCCAAATGGGAGCTTGGCTGATATGTTAAAGGGTAGCAAGAGGAGCTTGTTGGATTGGCCAACTAGGCATAAAATTGCTGTTGATGCTGCTGAAGGGCTTTCTTATTTGCATCACGATTGTGTCCCACCCATTGTTCATAGGGATGTAAAATCTAACAACATATTGGTGGATGGGGAGTTTGTGGCAAAAGTTGCAGATTTTGGAGTTGCCAAAATGGTTACAAGAATCAGCCAAGGGACAGAACCAATGTCTGGGATTGCAGGATCTTATGGCTACATTGCACCAGAATACGCGTATACTCTCCGGGTGAATGAAAAGTGTGACATATATAGCTTTGGCGTGGTCATTTTGGAGTTGGTAACCGGAAGACCTCCCATTGATCCAGAGTACGGTGAGAATGGTTTGGTGAAATGGGTTTCCTCTGCTTTGGAACATGAAGGACTGGATCATGTAATTGATCCTACACTGGACTCCAAATACAGGGAAGAAATCAGCAAGGTATTGAGCGTGGGGCTTCATTGTACCAGCTCCCTTCCAATAACTCGCCCCACAATGAGAAATGTGGTTAAAATGCTTCAGGAGGCAGCTACAGTTGCCAAATGTAGGAGTGTAATCGAGGGAGAAGTCCCATGTTGCAATGAAGGCCCGTCTCATAGTATCAGTGAAGTGTAG 2955 0.5036 MFVFVLFFLYSLSPLPLSLSLTQDGLFLLEARRQLYDPADSLSSWNPADATPCRWRGVTCDPRTAAVSAVALPNAGLSGPFPAALCRLPSLSSLDLSSNLINSSLAAVSLCRRLRLLDLSENALVGPIPDSLAGLAALRHLDLSGNNLSGDIPATLAALPRLETLNLVFNLLAGTIPSSLGNLTSLKHLQLAYNAFAPSRVPSQLGNLTNLETLFLAQCNLVGPIPDAFGNLARLTNLDLSQNSLTGFVPQWFTCLKRVTQIELYKNSLSGELPRGMSNMTSLKLFDASTNELTGTIPAELCELPLASLNLYENKLEGFLPGVIARSPNLYELKLFRNKLNGTLPSDLGSNSPLNHIDVSFNSFSGEIPANICRRGEFEELILIYNSFSGEIPASLGNCKSLKRVRLRNNNLSGTVPEGFWGLPHLHLLELLDNSLSGHISKAISGAYNLSNLLLSNNRFSGSIPEEIGLLENLVEFAASNNNLSGSVPGSMGKLSQLVNLDVSYNQLSGELFGGIGELGKVSYLNLSHNRFDGNVPSELGSLPVLNYLDLSWNNFSGEIPVQLQNLKLSELNLSYNQLSGDIPPLYANDKYKMSFIGNPGLCVHLPGLCDCSGKSKSIRRFVWILCSIFVLAGVVFGVAWFYLRYRKVKKLKKGLSALRWKSFHKLGFSEFEVAKLLSEDNVIGSGASGKVYKVVLSNGEVVAVKKLCGAPMNVDESVGSGKDEFDVEVETLGRIRHKNIVRLWCCCHSEDRRLLVYEYMPNGSLADMLKGSKRSLLDWPTRHKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILVDGEFVAKVADFGVAKMVTRISQGTEPMSGIAGSYGYIAPEYAYTLRVNEKCDIYSFGVVILELVTGRPPIDPEYGENGLVKWVSSALEHEGLDHVIDPTLDSKYREEISKVLSVGLHCTSSLPITRPTMRNVVKMLQEAATVAKCRSVIEGEVPCCNEGPSHSISEV 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2093 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Ssu3g2093 984 Pfam Leucine Rich repeat 565 582 IPR001611 GO:0005515
Ssu3g2093 984 SMART serkin_6 678 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2093 984 SUPERFAMILY Protein kinase-like (PK-like) 678 953 IPR011009 -
Ssu3g2093 984 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Ssu3g2093 984 Gene3D Ribonuclease Inhibitor 20 170 IPR032675 -
Ssu3g2093 984 Gene3D Phosphorylase Kinase; domain 1 646 760 - -
Ssu3g2093 984 SUPERFAMILY RNI-like 263 585 - -
Ssu3g2093 984 ProSiteProfiles Protein kinase domain profile. 678 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2093 984 ProSiteProfiles Leucine-rich repeat profile. 137 160 IPR001611 GO:0005515
Ssu3g2093 984 SUPERFAMILY L domain-like 44 305 - -
Ssu3g2093 984 ProSiteProfiles Leucine-rich repeat profile. 568 590 IPR001611 GO:0005515
Ssu3g2093 984 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 1 960 - -
Ssu3g2093 984 Gene3D Ribonuclease Inhibitor 171 275 IPR032675 -
Ssu3g2093 984 ProSitePatterns Protein kinases ATP-binding region signature. 684 707 IPR017441 GO:0005524
Ssu3g2093 984 Gene3D Transferase(Phosphotransferase) domain 1 761 967 - -
Ssu3g2093 984 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 960 - -
Ssu3g2093 984 Pfam Protein kinase domain 680 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2093 984 Gene3D Ribonuclease Inhibitor 277 613 IPR032675 -
Ssu3g2093 984 Pfam Leucine rich repeat 209 269 IPR001611 GO:0005515
Ssu3g2093 984 Pfam Leucine rich repeat 89 148 IPR001611 GO:0005515
Ssu3g2093 984 SMART LRR_typ_2 135 159 IPR003591 -
Ssu3g2093 984 SMART LRR_typ_2 88 111 IPR003591 -
Ssu3g2093 984 SMART LRR_typ_2 519 543 IPR003591 -
Ssu3g2093 984 SMART LRR_typ_2 495 515 IPR003591 -
Ssu3g2093 984 SMART LRR_typ_2 232 255 IPR003591 -
Ssu3g2093 984 SMART LRR_typ_2 183 208 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2093 Ssu-Chr3 68952888 68956076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2093 16 978 Receptor kinase-like Gene Family AT1G28440 58.452 0.0 1115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu3g2093 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2093 - - ccaj:109805711 1556.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2093 3 68952888 68956076 Ssu3g2093 3 68952888 68956076 ECH