Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2092 ATGCAAGAGCAGGGTGGTGGAATTCATGACCTACCTGGACTGCCTGCTGGAGTGAAGTTTGATCCCACAGATCAAGAGATTCTTGAACATTTGGAAGCGAAGGTGCGGTCTGATATTCATAAGCTTCACCCGCTAATTGATGAGTTCATTCCCACTCTTGAAGGCGAGAATGGAATCTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGGCCTTCCAAGGCATATACAACAGGAACAAGGAAAAGGAGAAAGGTGCACTCAGATGAGGATGGAAGTGAGACACGTTGGCACAAAACAGGTAAAACCAGGCCAGTCTACAACAGTGCCAAGTTGAAAGGGTACAAGAAAATCCTTGTACTATACACAAACTATGGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTCATGCACCAATACCACCTTGGCAGTGATGAAGAGGAGAAGGAAGGGGAGTTGGTGGTCTCCAAAGTTTTCTATCAAACACAGCCTAGACAATGTGGTTCCCTTATGAAAGACTCATCAGTTCCTGGGAAACATATGAAGGGTCAAAGTATGCATGAGGTaatcaataacaaaaacaatagtGGGTTTGTTGAGTACTACcattcaaatttcatatcatttgatCAAGGGGGCCAACATAGACCTAGCACTGCTCAAGTAATTTCCCATTTTCCTGTCCATGAAGGTGCTCCTTTCATTCCTTGA 747 0.427 MQEQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNSAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCGSLMKDSSVPGKHMKGQSMHEVINNKNNSGFVEYYHSNFISFDQGGQHRPSTAQVISHFPVHEGAPFIP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2092 248 MobiDBLite consensus disorder prediction 87 111 - -
Ssu3g2092 248 SUPERFAMILY NAC domain 9 173 IPR036093 GO:0003677|GO:0006355
Ssu3g2092 248 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 247 IPR044799 GO:0003700
Ssu3g2092 248 MobiDBLite consensus disorder prediction 93 111 - -
Ssu3g2092 248 Pfam No apical meristem (NAM) protein 15 154 IPR003441 GO:0003677|GO:0006355
Ssu3g2092 248 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Ssu3g2092 248 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Ssu3g2092 248 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2092 Ssu-Chr3 68921670 68923542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2092 6 248 NAC Transcription Factor Family AT4G28500 63.258 5.59e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu3g2092 NAM 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2092 - - gmx:100797459 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2092 3 68921670 68923542 Ssu3g2092 3 68921670 68923542 ECH