Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2090 ATGCTAAGAAAGATGGATAAAGGAGAAATCACAAATGCTTTCCCTCAGAACCTAACTGCTTCTGCTGCATCTAATAATAACAACCCTCCTCCTGTtttgaagaggaagagaaacCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACCCTTATGGCTACGAACAGATTCTTGTGTGAAACCTGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTCCATCGACGTGGGCATAACCTTCCTTGGAAGCTTAAGCAAAGGACGGGGAAGGAAGCAAGGAAAAGGGTTTATGTGTGTCCAGAGAAGAGTTGTGTACACCACGACCCTTCAAGGGCTCTTGGAGACTTAACCGGGATAAAGAAGCACTTTTGCAGAAAGCACGGGGAAAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAAACCTGTGGCACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCACGGAGAGATAGCTTCATCACTCACAGGGCCTTCTGTGATGCCTTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAGACATGAACACCTCCCTAGGGGGTAACATTGGTTACAACATAATAGGAACATCCCTAAGCCCTAACATGGCAACCCATTTTCCCTCAATTTTCAAGCCAGTTTCAAGCACTGACGAAACAAGTAACCAAACATCTAGGGGGCTACTACCCCTTTGGATGGGTCAAACATCTTCTCAGGCTCAAGAAACAATGGTCCACAGCAATTTGCGTGAGATTCATCAACTGGAGTCTGCCACAAGCTCAGGAACAGTATATGGTGGCAACTCACTTGTCCAGTGCTCAAATCTTCCACCTCCTAAATATCAACTAAGTTGGGTGTTTGGAACTAAACTTTCCAACACTAACAGCCAAGAGCTAGCAACTAGCACCACTTCACTTCCCTTAGGCAACACAAGTGTTCCTTCCTTGTATAGTTCCCAACACCAACCCCGCCAAACATCTTCATCAGCAAACATGTCAGCCACAGCTTTGTTGCAGAAAGCTGCTCAAGTTGGAGTAACCTCAAGTGACCCTTCATGGCTTGGGAGCTTAGGTTTGAAATGTGGTAACAGTCAAGGTCAAGATGGGAATAATGGCAAGTTTAGTGGCATGTACGGTTCAAGTTTGGTGCTCACCACTCTTGGGAACGAGGCAGATAACTCTGCATGTGACTTGTCACAAATGCACCCTCCCAAACGTAGACACGTACTCAATGAGGAAAGTGGAGGGGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAAACCTTTTGCCACCCTTCATCAACCAACGGGTGGATTTGATCTGA 1392 0.4547 MLRKMDKGEITNAFPQNLTASAASNNNNPPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASDMNTSLGGNIGYNIIGTSLSPNMATHFPSIFKPVSSTDETSNQTSRGLLPLWMGQTSSQAQETMVHSNLREIHQLESATSSGTVYGGNSLVQCSNLPPPKYQLSWVFGTKLSNTNSQELATSTTSLPLGNTSVPSLYSSQHQPRQTSSSANMSATALLQKAAQVGVTSSDPSWLGSLGLKCGNSQGQDGNNGKFSGMYGSSLVLTTLGNEADNSACDLSQMHPPKRRHVLNEESGGGQTRDFLGVGVQNLLPPFINQRVDLI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2090 463 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Ssu3g2090 463 Gene3D Classic Zinc Finger 96 187 - -
Ssu3g2090 463 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Ssu3g2090 463 PANTHER F-BOX ASSOCIATED PROTEIN 26 462 - -
Ssu3g2090 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 462 - -
Ssu3g2090 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Ssu3g2090 463 Gene3D Classic Zinc Finger 59 86 - -
Ssu3g2090 463 MobiDBLite consensus disorder prediction 319 348 - -
Ssu3g2090 463 MobiDBLite consensus disorder prediction 12 32 - -
Ssu3g2090 463 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2090 Ssu-Chr3 68890663 68893088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2090 30 451 IDZ Gene Family AT1G03840 49.499 1.63e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g2090 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2090 K25870 - gmx:100790620 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2090 3 68890663 68893088 Ssu3g2090 3 68890663 68893088 ECH