Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu3g2085 | ATGTTTGAGTCAATTCCTCCTGCCGATGCCATTCTGTTGAAGTGGATATTGTATGATTGGAATGATGAGCAGTGTGTGAAAACACTGAAGAAATGCAAGGAGGCAATTATTAAGAGCAAAGGCAAAGAACAAAAGGTGATTATCATAGACATTGTGCTGGAGAACGAAAAGGGAGATGATGAATCAATTGAAACACAACTCTTCTTTGATATGTTTCTGATGGTGTGTGTCctggaaaagagagaaatgagatAG | 255 | 0.3529 | MFESIPPADAILLKWILYDWNDEQCVKTLKKCKEAIIKSKGKEQKVIIIDIVLENEKGDDESIETQLFFDMFLMVCVLEKREMR | 84 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu3g2085 | 84 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 1 | 76 | IPR029063 | - | |
| Ssu3g2085 | 84 | PANTHER | O-METHYLTRANSFERASE | 1 | 77 | IPR016461 | GO:0008168 | |
| Ssu3g2085 | 84 | Gene3D | Vaccinia Virus protein VP39 | 1 | 84 | IPR029063 | - | |
| Ssu3g2085 | 84 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 84 | IPR016461 | GO:0008168 | |
| Ssu3g2085 | 84 | PANTHER | O-METHYLTRANSFERASE | 1 | 77 | - | - | |
| Ssu3g2085 | 84 | Pfam | O-methyltransferase domain | 1 | 76 | IPR001077 | GO:0008171 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu3g2085 | Ssu-Chr3 | 68710586 | 68711839 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu3g2085 | 1 | 82 | Monolignol Biosynthesis Gene Families | AT1G51990 | 36.145 | 3.45e-13 | 61.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu3g2085 | - | K16040 | gmx:100781008 | 127.102 |