Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2081 ATGATGAGAGAAAGTTCCAAGGGCAAGTGTGGATCTTCATCTCTTCAATCCATGAAGGAGAAGGAAAAACACCTGGTGGATAAAATTCAAGGGATTTTCAACAATCTTCAGTCTGCAAGAAAGGAGGGCAGGGGTAATGACATTGTGATCTTTGAGGAGCAGATGCATCAGTTGCTCCGAGAGTGGAAAGAGGAACTGGAGTCACCAGCCACCTCCTTGGCTGATGGAAGCTTTGATTCGTTTACCAGCGAACTAGCCCAACTGTTGCAAGTGATTGAGGAGAAAGATGATGCAACTAGTCCATTGACAAAACCTGTGCCGTTGAAGACTGAGCTCCATCCAGATAACATTAGTGACGgcaattttcagttttttcagGAGAAGCATTTTGATGATAACCAACCACTAGATCATACTTTTGAAGGCTCTGCTTCAACTCTGTACAACAATGCTTTTAATAACACAGATATGACACAGTTGGATTATCATCCATTCAGTTTAAATCAAGATATGGATCACAACCCAGTAGGTCACAACTCTGATTTGATTGGTCAGTTGGATTTATATCAGGACCCCAGGCACAACACAGAAATAAAAAACTCAGAATCAACTCAATTTAGTTTAGAAGGTTTTGATTGTAGCCAATTCTTTGGAACTGATGACACTCTGCAGCATGGAGAGAATGTTATACCTAACATTCTTCCAAATATCTGCCCTCCACCTTCTGCTTTCTTAGCCCCAAAATGTGCCCTATGGGACTGTTTCAGACCTGCTCAAGGGGTAGAATGGTGCCAGAACTACTGTAGTAGTTGTCATGAGCTGTTGGCAAATAATGAGGGTCTTCCCGGCATGACTCCAATATTGCGACCTGGGGGCATTGGTGTAAAAGATGGTCCTTTGTTTGCTGCTGTTCTTGCTAAGACGCAGGGAAAGGAAGTGGGCATCCCTAGTTGTGAAGGTGCTGCCTCAACTAAATCCCCCTGGAATGCTCCAGAATTCTttgatctttcttttcttgagGGTGAAACTCTTAGGGAGTGGCTCTTCTTTGACAAGCCTAGAAGGGCATTTGAAAGTGGAAATAGAAAACAGAGATCACTTCCGGATTACAGTGGGCGTGGTTGGCATGAATCGAGGAAGCAGGTGATGAAGGAACATGGGGGACAAAAGAGGTCCTATTACATGGACCCCCAGCCTCTTAGTTATCTTGAGTGGCATTTGTACGAGTATGAGATCAACAACCATGATGGTTGTGCATTATACAGACTAGAACTAAAGCTTgtggataaaaagaaaagtcctAAAGGAAAAGTGACCAAGGAATCACTTACTGATTTACAGAACAAGATGGGACAGCTTACTGCCGCTGTTCCATCATGTGATGATGGACAACCGGTCAAGACAAAGGCCAAGTCTGAGAGTGATGGATCTCCTGAAAGGTAA 1443 0.4213 MMRESSKGKCGSSSLQSMKEKEKHLVDKIQGIFNNLQSARKEGRGNDIVIFEEQMHQLLREWKEELESPATSLADGSFDSFTSELAQLLQVIEEKDDATSPLTKPVPLKTELHPDNISDGNFQFFQEKHFDDNQPLDHTFEGSASTLYNNAFNNTDMTQLDYHPFSLNQDMDHNPVGHNSDLIGQLDLYQDPRHNTEIKNSESTQFSLEGFDCSQFFGTDDTLQHGENVIPNILPNICPPPSAFLAPKCALWDCFRPAQGVEWCQNYCSSCHELLANNEGLPGMTPILRPGGIGVKDGPLFAAVLAKTQGKEVGIPSCEGAASTKSPWNAPEFFDLSFLEGETLREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQPLSYLEWHLYEYEINNHDGCALYRLELKLVDKKKSPKGKVTKESLTDLQNKMGQLTAAVPSCDDGQPVKTKAKSESDGSPER 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2081 480 MobiDBLite consensus disorder prediction 360 390 - -
Ssu3g2081 480 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2081 480 PANTHER TRANSCRIPTION FACTOR VOZ2 2 474 - -
Ssu3g2081 480 MobiDBLite consensus disorder prediction 466 480 - -
Ssu3g2081 480 PANTHER TRANSCRIPTION FACTOR VOZ1 2 474 IPR039277 GO:0006355|GO:0048578
Ssu3g2081 480 MobiDBLite consensus disorder prediction 369 390 - -
Ssu3g2081 480 MobiDBLite consensus disorder prediction 453 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2081 Ssu-Chr3 68503860 68506861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2081 1 458 VOZ-9 Transcription Factor Family AT1G28520 52.495 6.72e-159 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF VOZ Ssu3g2081 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2081 - - gmx:100808629 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2081 3 68503860 68506861 Ssu3g2081 3 68503860 68506861 ECH