Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2076 ATGTTCGCTCAGCGACCTAtatgctcgctcaacgagtaCCTTCCATATAAAGAACACACTTTCCTTcttgaagAGCTAAACCATGGTGGGTCCACTTCTTCTTCGTTCCCTCTGGTCCTCCACCAGAAAATccttctcctcttcctctcctccCCTCTCCCACTCGCGCTTCCTCTCACGTGCCTTCGCCGCCGCTCCCgcctccgccgccgccgccgccactCCGGCGCCTCCCTCGACCCCAGCCTCCTCCGCAACGTGGCCGTGATCGCCCATGTCGACCACGGCAAGACCACCCTCATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACATCCCCCACGAGCGCGCCATGGACTCCATCACGCTCGAGCGCGAGCGCGGCATCACCATCGCTTCCAAGGTTACGTCTGTTTCGTGGAAGGAGAATGAGCTGAACATGGTTGACACTCCCGGACATGCTGATTTTGGTGGCGAGGTTGAACGTGTTGTTGGGATGGTTGAGGGAGCGATTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACAAAGTTTGTTCTTGCAAAGGCCTTGAAGTATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGACCTTCAGTTACTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAGCAACTAGACTTTCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCGTCCAGCACATTTACCAAGGATCCTCCTGCTGAGGCCAGAAATATGTCACAGTTGCTTGATGCCGTTGTAACACATGTCCCACCACCAAATGCAGACATTGATGCGCCTTTCCAAATGCTGGTTTCAATGATGGAACGAGATTTCTATCTTGGGCGGATTTTGACTGGACGCATATACTCTGGGGTTGTTCGTGTTGGTGACAGGGTTCATGGGCTACGTAATAAAGATTCTGGTGCTGAAAAGATTGAAGATGGAAAGgtgGTGAAACTGATGAAAAAGAAGGGTACGAACATGGTTCTAATTGATTGTGCTGGAGCTGGTGATATAATATCAGTTGCTGGCTTATCAAGTCCATCAATAGGCCATACAGTGGCAACTGTAgagGTTATGTCTGCATTGCCCACAATTGAATTGGACCCTCCAACGATTTCCATGACTTTTGGTGTAAACGACTCCCCATTGGCCGGTCGTGATGGTACTCATTTGACTGGGGGAAAAATTGGTGACCGACTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTCCAGTTGGGTATTTTGATTGAGAATATGAGACGTGAAGGATTTGAGTTATCAGTCTCTCCTCctaaagtcatGTATAAAACTGAAAATGGTCAGAAGCTTGAGCCCGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGCTTGGTAATGGAGGCCTTGTCTCATAGACGAGCTGAGGTTACTGACATGGGTCCTGTCTCGGGAACTGTTGGTCGAACTAGATTGTCTCTGACTTGTCCATCAAGGGGCCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAAATGGATTCATGCATCGTGCTTTCCATGCATATGAAAATTTTCGAGGCCCTCTTGGCAATGTGAGGAAAGGAGTACTGGTGTCAATGGGTTTTGGTACAATCACAGCTCATGCATTGATGAGCTTAGAAGCTCGAGGGACTCTTTTTGTAACTCCTGGAATGGAGACGTATGATGGAATGATTGTTGGAGAACATTCACGGGATTCAGATCTTGATGTCAATCCAGTAAGGGCTAAAGAACTTTCAAATGTGCGTTCTGCTGCCAAAGATGAGAATGTGAAGTTGACTCCCCCTCGCCTTATGACACTTGAAGAAGCTATAGGGTATGTAGCTTCGGATGAGCTTATTGAGGTTACGCCAAAAGCTATCCGTTTACGGAAGAAATACCTTGATGTTAACAAGCGTAAAGCCATGAGTAAAAAGCCAAAGGAATGA 2079 0.4594 MFAQRPICSLNEYLPYKEHTFLLEELNHGGSTSSSFPLVLHQKILLLFLSSPLPLALPLTCLRRRSRLRRRRRHSGASLDPSLLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSITLERERGITIASKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASSTFTKDPPAEARNMSQLLDAVVTHVPPPNADIDAPFQMLVSMMERDFYLGRILTGRIYSGVVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLIDCAGAGDIISVAGLSSPSIGHTVATVEVMSALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGQKLEPVEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVSGTVGRTRLSLTCPSRGLVGYRSVFSSDTRGNGFMHRAFHAYENFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGTLFVTPGMETYDGMIVGEHSRDSDLDVNPVRAKELSNVRSAAKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKAMSKKPKE 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2076 692 PRINTS GTP-binding elongation factor signature 146 156 IPR000795 GO:0003924|GO:0005525
Ssu3g2076 692 PRINTS GTP-binding elongation factor signature 198 207 IPR000795 GO:0003924|GO:0005525
Ssu3g2076 692 PRINTS GTP-binding elongation factor signature 126 134 IPR000795 GO:0003924|GO:0005525
Ssu3g2076 692 PRINTS GTP-binding elongation factor signature 162 173 IPR000795 GO:0003924|GO:0005525
Ssu3g2076 692 PRINTS GTP-binding elongation factor signature 86 99 IPR000795 GO:0003924|GO:0005525
Ssu3g2076 692 Pfam Elongation factor Tu GTP binding domain 84 277 IPR000795 GO:0003924|GO:0005525
Ssu3g2076 692 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 82 280 IPR000795 GO:0003924|GO:0005525
Ssu3g2076 692 Pfam Elongation factor Tu domain 2 301 374 IPR004161 GO:0005525
Ssu3g2076 692 CDD BipA_III 391 468 - -
Ssu3g2076 692 Gene3D - 83 280 IPR027417 -
Ssu3g2076 692 CDD BipA_TypA_C 483 563 IPR035651 -
Ssu3g2076 692 Gene3D Elongation Factor G (Translational Gtpase), domain 3 392 676 - -
Ssu3g2076 692 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 84 684 IPR006298 GO:0005525
Ssu3g2076 692 Gene3D Translation factors 281 385 - -
Ssu3g2076 692 Gene3D - 474 568 - -
Ssu3g2076 692 SUPERFAMILY Translation proteins 229 385 IPR009000 -
Ssu3g2076 692 SUPERFAMILY EF-G C-terminal domain-like 389 472 IPR035647 -
Ssu3g2076 692 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 67 691 - -
Ssu3g2076 692 CDD BipA_TypA_II 287 384 - -
Ssu3g2076 692 TIGRFAM small_GTP: small GTP-binding protein domain 85 224 IPR005225 GO:0005525
Ssu3g2076 692 PANTHER ELONGATION FACTOR FAMILY PROTEIN 67 691 - -
Ssu3g2076 692 Gene3D bipa protein 569 684 IPR042116 -
Ssu3g2076 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 289 IPR027417 -
Ssu3g2076 692 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 119 134 IPR031157 -
Ssu3g2076 692 SUPERFAMILY EF-G C-terminal domain-like 483 599 IPR035647 -
Ssu3g2076 692 Pfam Elongation factor G C-terminus 481 564 IPR000640 -
Ssu3g2076 692 CDD TypA_BipA 84 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2076 Ssu-Chr3 68425530 68439441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2076 84 207 Eukaryotic Initiation Factors Gene Family AT3G22980 43.077 7.25e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2076 K06207 - gmx:100782425 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2076 3 68425530 68439441 Ssu3g2076 3 68425530 68439441 ECH