Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2075 ATGCATCCAGCATGTGCACCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAATTGTATATTGGCACCTTACTTTCCATCAAACAGAAGCCGCGAGTTCCATGCTGTGCACAAGGTTTTTGGTGTTAGCAATATAACCAAGTTGGTGAAGAATGCTAAAGAGGAAGATCGAAGAAGAGTTGTGGACTCATTGATATGGGAAGCATGCTGTAGGCAAAGGGATCCCATACATGGTCCTTATGGAGAGTACACAAAAGTTTACAATGAGTATAAGAAAGTGTTGGATGAACTCAAGAGATTCAGAAGCCAAAACCAAGTGTTGCAATTTGCCCCTCTAGGATTGAAGTCTGTACAAGATTTGATTGCTTGCAACGGGACCAAAGGGGAACACAAAGCAGAAGTTGGTAATGCACTGGATTATCTTCATGGGAAAAAGAATGGTATTATTGATTCTGAAATTTATGGTACTTATTGTTCGAATTATTTACAAGAGTTTCAGAATATGAGGCCGGAAGCTGTCATCCCGTTTCAGCAGCACTCTCAACCATACTATATTGCAGAGATAGCAGAGGACCTAATTTGGTCAATGGTGATGTTGGTTGGCAAGAAATGGTGGCAATAA 621 0.4074 MHPACAPCKHQRKKCSENCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAKEEDRRRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKVLDELKRFRSQNQVLQFAPLGLKSVQDLIACNGTKGEHKAEVGNALDYLHGKKNGIIDSEIYGTYCSNYLQEFQNMRPEAVIPFQQHSQPYYIAEIAEDLIWSMVMLVGKKWWQ 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2075 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 2 139 - -
Ssu3g2075 206 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Ssu3g2075 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 139 - -
Ssu3g2075 206 Pfam Lateral organ boundaries (LOB) domain 4 99 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2075 Ssu-Chr3 68392459 68393548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2075 2 102 AS2 family AT1G06280 55.446 1.53e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu3g2075 LOB 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2075 - - gmx:100809173 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2075 3 68392459 68393548 Ssu3g2075 3 68392459 68393548 ECH