Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2071 ATGGCTCAATTGCCACCAAAAATTCCAAACATGACACCCAATTGGCTGGACTTTTCTTCTCCTCGCCAAAAGATGCCTTCCCTCAAGAGCGTGTCACCATCAAACACAAACGTGTCAAACCAAAACCCTTCATGGGTGGATGAGTTTCTGGACTTCTCGGCGGCGAGACGCGGCGCCCACCGGCGGTCGGTGAGTGACTCCATCACCTTCTTGGAGGCACCAATGCTGGACCACCATTGCAAGggtggtagcggtggtggtggcggtggcgacAACGAGTTTGAGAGGTTCGACGACGAACAATTCATGTCCATGTTTAGTGATGAGGCTTCCGGGAATAACAACACCATGATGGCACACACGTTGTCCTCCTCCAACCCTTCTACACCCTCTGACCACAACAGCATCAATGATGAGAAGGAAATGAACAAggaaaaggaggaggaggaggaagagaagaagCAAGTGAAGCATGAGTCGGATGAGGACGAAAGCCAATGCAAGCAAGAAATCACACTACCTCCCAACAATGGTGATAGTAATGCAAATGCAACAACTTGTTCCAGTGACAGAATTACTGACCCCAAGAGGGTTAAAAGAATCTTGGCAAATAGACAATCGGCGCAAAGATCAAGAGTGAGGAAGCTGCAATACATATCTGAACTTGAGCGAAGTGTGACTTCATTACAGGCCGAAGTTTCAGTATTGTCTCCACGGGTTGCATTTTTGGACCATCACCGTTTGCTTCTAAATGTTGACAACAGTGCTTTGAAGCAAAGAATCGCCGCGCTGGCCCAAGACAAGATCTTCAAAGATGCACATCAAGAAGCACTGAAGAGGGAGATAGAGAGACTGAGGCAAGTGTATCAccaacaaaacataaagaagaTGGACAGTGCTGCAGGGTCACCATCCCAATCCCCATCCCCATCACCAAAACCACGATGTGATACTCACACTGAAAAGGAACAGCTTATCAATGTTTGA 987 0.4357 MAQLPPKIPNMTPNWLDFSSPRQKMPSLKSVSPSNTNVSNQNPSWVDEFLDFSAARRGAHRRSVSDSITFLEAPMLDHHCKGGSGGGGGGDNEFERFDDEQFMSMFSDEASGNNNTMMAHTLSSSNPSTPSDHNSINDEKEMNKEKEEEEEEKKQVKHESDEDESQCKQEITLPPNNGDSNANATTCSSDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHHRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMDSAAGSPSQSPSPSPKPRCDTHTEKEQLINV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2071 328 MobiDBLite consensus disorder prediction 1 40 - -
Ssu3g2071 328 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 199 214 IPR004827 GO:0003700|GO:0006355
Ssu3g2071 328 SUPERFAMILY Leucine zipper domain 196 249 IPR046347 GO:0003700|GO:0006355
Ssu3g2071 328 Coils Coil 275 295 - -
Ssu3g2071 328 SMART brlzneu 192 256 IPR004827 GO:0003700|GO:0006355
Ssu3g2071 328 MobiDBLite consensus disorder prediction 169 191 - -
Ssu3g2071 328 MobiDBLite consensus disorder prediction 13 40 - -
Ssu3g2071 328 MobiDBLite consensus disorder prediction 107 133 - -
Ssu3g2071 328 MobiDBLite consensus disorder prediction 107 192 - -
Ssu3g2071 328 MobiDBLite consensus disorder prediction 292 306 - -
Ssu3g2071 328 Pfam bZIP transcription factor 196 240 IPR004827 GO:0003700|GO:0006355
Ssu3g2071 328 Gene3D - 195 268 - -
Ssu3g2071 328 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 243 IPR004827 GO:0003700|GO:0006355
Ssu3g2071 328 Coils Coil 136 166 - -
Ssu3g2071 328 CDD bZIP_plant_RF2 197 247 IPR044759 GO:0003700|GO:0006355
Ssu3g2071 328 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 325 - -
Ssu3g2071 328 PANTHER BASIC LEUCINE ZIPPER 34 1 325 - -
Ssu3g2071 328 MobiDBLite consensus disorder prediction 134 168 - -
Ssu3g2071 328 MobiDBLite consensus disorder prediction 289 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2071 Ssu-Chr3 68347080 68349420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2071 1 273 bZIP Transcription Factor Family AT3G58120 58.586 2.07e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu3g2071 bZIP_1 2.8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2071 - - gmx:778128 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2071 3 68347080 68349420 Ssu3g2071 3 68347080 68349420 ECH