Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2068 ATGGTGATCACAGACTGTGGTGGGAACGAAAGGATCCGCCGCCGCCGCTTCGCCATTCACCGGCTCACCATCGCCGCTCTTCACGTCTCTGACTTCGACTCCGCCGCCCACCGCCGTGCCGAGCCGCCCAACACGGGGCTCGACCCGGCCCTCGTAGCGTCGCTGCCGACGTTCACCGTCGGAGCGAAGGTTCTAGAAGGTGGCGGCTCCGCGGTGGAGTGTGCCGTGTGCTTGAGTGCTCTGGAAGGTGAAGAGAAGGCCAAGTTGCTTCCGAACTGTAACCACTTTTTCCACGTGGGTTGCATTGATACGTGGCTGAGTTCCCATTCCACGTGTCCCTTGTGTCGAGCGGGGATCCAGCCCCGGCTCGAACCGCAGAACCGCGAGGGTCCTGTTGGTCTAGCACTTGATGGTGCACCTGCACCGTTTGGTCTTGATAGCGGCACCAATGGTAGTGGTGAATCATCGAAAATTAATGGGTCTAATTCACGGTTGAGCTCATTTAGAAGGGTTCTTAGTACGGAAAGATCTTCCAGAAGAATCCAACCGTCTAGccatgatgaagatgatgatgacgGTGTTGATTTGGAGAGACAGTGA 600 0.5517 MVITDCGGNERIRRRRFAIHRLTIAALHVSDFDSAAHRRAEPPNTGLDPALVASLPTFTVGAKVLEGGGSAVECAVCLSALEGEEKAKLLPNCNHFFHVGCIDTWLSSHSTCPLCRAGIQPRLEPQNREGPVGLALDGAPAPFGLDSGTNGSGESSKINGSNSRLSSFRRVLSTERSSRRIQPSSHDEDDDDGVDLERQ 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2068 199 CDD RING-H2_PA-TM-RING 73 116 - -
Ssu3g2068 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 122 IPR013083 -
Ssu3g2068 199 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 11 199 - -
Ssu3g2068 199 MobiDBLite consensus disorder prediction 173 187 - -
Ssu3g2068 199 Pfam Ring finger domain 73 116 IPR001841 -
Ssu3g2068 199 SUPERFAMILY RING/U-box 68 124 - -
Ssu3g2068 199 PANTHER RING FINGER DOMAIN-CONTAINING 11 199 - -
Ssu3g2068 199 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Ssu3g2068 199 SMART ring_2 74 115 IPR001841 -
Ssu3g2068 199 MobiDBLite consensus disorder prediction 126 199 - -
Ssu3g2068 199 MobiDBLite consensus disorder prediction 148 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2068 Ssu-Chr3 68298358 68301537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2068 12 199 C3H Transcription Factor Family AT2G42360 45.361 6.10e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2068 K19038 - gmx:100783358 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2068 3 68298358 68301537 Ssu3g2068 3 68298358 68301537 ECH