Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2067 ATGAGGAGCAGTGCAGGGGAGATTGTTCAAGTAGAAGGAGGGCACATTGTTAGGTCCACAGGTAGAAAAGATCGCCACAGCAAGGTCTACACTTCCAAAGGACCGCGTGATCGCAGGGTTAGACTCTCAGCACACACAGCCATTGAGTTCTATGATGTTCAAGATCGTCTTGGCTATGACAGACCAAGCAAGGCTGTGGACTGGCTCATCAAGAAGGCAAAGCCTTCCATTGACAAGCTTGCTGAGCTTCCTCCATGGAATCCAATTATTCATGAGGAAGAGCAGCATGATGCTGATGCTGCAGGCTCAAGTGGAATCATCGCCAttgcacaacaacaacaacaagaacaatCAGAGTCTTGTGGTTACAACTTTCAGCTCCAAAGGCAATTGAGGGCCTTAATTTCACCCCATGTTGACACTGACCCCATGGCTTTGTTTCCCACAACCTCTGCCACTTCCTCCATCAATTTTCAAATCAACAACCTCAGAAGATCTTGGCCTATCCCTCCATTGTTTCCAAGACCACCCTGGCCTAATTCATTGGCAATCACAACAAGCAGGTGA 567 0.4603 MRSSAGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKPSIDKLAELPPWNPIIHEEEQHDADAAGSSGIIAIAQQQQQEQSESCGYNFQLQRQLRALISPHVDTDPMALFPTTSATSSINFQINNLRRSWPIPPLFPRPPWPNSLAITTSR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2067 188 Pfam TCP family transcription factor 21 114 IPR017887 -
Ssu3g2067 188 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Ssu3g2067 188 PANTHER TRANSCRIPTION FACTOR TCP4 3 149 - -
Ssu3g2067 188 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 149 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2067 Ssu-Chr3 68272963 68273529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2067 5 88 TCP Transcription Factor Family AT3G15030 89.286 2.92e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu3g2067 TCP 8.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2067 - - lang:109351858 228.794