Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2059 ATGGAAATGGAAGCTTTTGTATGGGGTGGTGGCATTGATGGAGATGGCCCTAAGAGGAATAGTGATGGTTTTGAAGGGAACAATGGTGTAATTGGAAGTGGGTGTGGTTCATCTTTATCTCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCACCTGTGAAATTGGAAAGGAAGGGGGTGTCCACTGAGAGAAGCATTGAAGCTTTGAAGAGCCACAGCGAGGCAGAGAGGAGGAGGAGGGCAAGGATTAATGCACATCTTGATACACTTCGCAGTGTGATTCCGGGTGCTATGAAGATGGACAAAGCGTCGTTACTTGGTGAGGTTATTAGACATTTGAAAGAGCTGAAAAAGGATGCAGCACAGGCTAGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAGGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCCGGGTTATTGTCTGATATAAGACAAGCCCTAGATGCTCTTCATCTTATGATAACAAGGGCAGATATTGCAACATTAGAAGGAAGGATGAAGAATGTCTTTGTGATCATTAGCTGCAAAGAACAGAACTTTGAAGATGCTGCTTACCGTCAGTTTCTCGCCGGTTCTGTTCACCAAGCTCTTAGGTCTGTGCTCAATAGATTTTCTGTTTCACAGGACATTTTAGGAACCAGGAAAAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTGGAAGATTTTTTGTAA 777 0.426 MEMEAFVWGGGIDGDGPKRNSDGFEGNNGVIGSGCGSSLSLVLDRERGELVEAPVKLERKGVSTERSIEALKSHSEAERRRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKKDAAQASEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMITRADIATLEGRMKNVFVIISCKEQNFEDAAYRQFLAGSVHQALRSVLNRFSVSQDILGTRKRRRISIFSSSSLEDFL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2059 258 Gene3D - 64 127 IPR036638 GO:0046983
Ssu3g2059 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Ssu3g2059 258 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 258 - -
Ssu3g2059 258 SMART finulus 75 124 IPR011598 GO:0046983
Ssu3g2059 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 125 IPR036638 GO:0046983
Ssu3g2059 258 CDD ACT_UUR-ACR-like 157 228 - -
Ssu3g2059 258 Pfam Helix-loop-helix DNA-binding domain 73 118 IPR011598 GO:0046983
Ssu3g2059 258 PANTHER TRANSCRIPTION FACTOR BHLH30 16 258 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2059 Ssu-Chr3 68109698 68111144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2059 23 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 37.083 7.19e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g2059 HLH 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2059 - - gmx:100788819 426.402